Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g0606 ATGGATTCAGAACAAATGGAGAAGAAAGAAACAATTTTGATGCAGAAATATGAGCTTGGCCGTTTGCTTGGCCAAGGAACTTTCGCTAAAGTTTACCACGCAAGAAACTTGAGCACCGGCCAGAGCGTAGCCATTAAAGTCATAAACAAAGAAAAGGTTCTCCGAATCGGTTTGATTGACCAAATCAAGCGTGAAATCTCTGTCATGAGCCTCATGAGGCACCCCAACATTGTGCAGCTCTACGAAGTCATGGCGAGCAAAACCAAGATCTATTTTGCAATGGAATACGTGAAAGGTGGTGAGCTTTTTGGTAAAGTTGCCAAAGGCAAACTGAAGGAAGATATGGCCCGAAAATATTTCCAGCAGCTTATTGGGGCTGTTGATTTCTGCCATAGCAGAGGGGTCTATCACCGTGACATAAAACCAGAGAATCTTCTTCTAGACGAAAAAGGGGATCTCAAAATTTCAGACTTTGGACTGAGTGCACTGTGGGAACCCACGAAGAATGGTGGCCTCCTTCACACAACCTGTGGTACTCCAGCTTATGTAGCCCCTGAAGTGCTCAACAGGAAAGGCTATGATGGAGCCAAGGCAGATATTTGGTCTTGTGGGGTGGTCCTGTTTGTTCTTTTAGCAGGCTATCTTCCTTTCCAGGATCAAAATCTGATTGAAATGTACAGGAAGATTAGCACAGGATCATTCAAGTGCCCAAAATGGTTCCCACCTCAGGCTAGAAAGCTTCTTTCAAGAATCCTTGATCCCAATCCAAGGACAAGGCTAAATGCTACCAAGATTATGGAAAATAGCTGGTTTAGAATGGGGTATCAGCAGATTAAAGCACCAACGTTGCCAGTGCCACCCTTATCTGCTCCAGATGGTAAGGATAACTCTGTTGGTGATGTTCAGGGTACTTTTGCTACATCAAATTCAGGTGAAGAAAGCCCCATGAAACCATCTTATTTCAATGCATTTGATCTCATATCTATCTCTTCAGGCTTTGACCTTTCTGGCCTGTTTGAGAAAGATAACTGTCAAAGACAACAGGCTAGATTCAGCACTACAAAACCAGCTTCTACTATTGTGTCAAAACTGGAAGAAATAGCACAGATGGAGAGTAGATTTAAGGTTATGAAGAAAGATGGTATTGTTAGATTGCAGGGAAGCAAGACAGGTCGAAAAGGCCAACTTGGTATTGATGCAGAAATTTTTGAAGTCACATCTTCCTTTCATATTGTTGAGGTGAAGAAAATTGCTGGGGACACACTGGAGTATATACAATTCCGAGACCAGGACCTGAAACCTGCTTTGAAGGATATAGTGTGGACTTGGCAAGGAAGTGAGCAGGAGCAGCACTAG 1356 0.4322 MDSEQMEKKETILMQKYELGRLLGQGTFAKVYHARNLSTGQSVAIKVINKEKVLRIGLIDQIKREISVMSLMRHPNIVQLYEVMASKTKIYFAMEYVKGGELFGKVAKGKLKEDMARKYFQQLIGAVDFCHSRGVYHRDIKPENLLLDEKGDLKISDFGLSALWEPTKNGGLLHTTCGTPAYVAPEVLNRKGYDGAKADIWSCGVVLFVLLAGYLPFQDQNLIEMYRKISTGSFKCPKWFPPQARKLLSRILDPNPRTRLNATKIMENSWFRMGYQQIKAPTLPVPPLSAPDGKDNSVGDVQGTFATSNSGEESPMKPSYFNAFDLISISSGFDLSGLFEKDNCQRQQARFSTTKPASTIVSKLEEIAQMESRFKVMKKDGIVRLQGSKTGRKGQLGIDAEIFEVTSSFHIVEVKKIAGDTLEYIQFRDQDLKPALKDIVWTWQGSEQEQH 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g0606 451 ProSiteProfiles NAF domain profile. 316 340 IPR018451 GO:0007165
Glsi03g0606 451 Pfam NAF domain 318 378 IPR004041 GO:0007165
Glsi03g0606 451 ProSitePatterns Serine/Threonine protein kinases active-site signature. 135 147 IPR008271 GO:0004672|GO:0006468
Glsi03g0606 451 FunFam Non-specific serine/threonine protein kinase 316 441 - -
Glsi03g0606 451 FunFam Non-specific serine/threonine protein kinase 10 310 - -
Glsi03g0606 451 Pfam Protein kinase domain 17 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi03g0606 451 SUPERFAMILY Protein kinase-like (PK-like) 13 304 IPR011009 -
Glsi03g0606 451 Gene3D Transferase(Phosphotransferase) domain 1 7 301 - -
Glsi03g0606 451 CDD STKc_SnRK3 16 270 - -
Glsi03g0606 451 Gene3D Kinase associated domain 1, KA1 315 442 - -
Glsi03g0606 451 FunFam Non-specific serine/threonine protein kinase 8 96 - -
Glsi03g0606 451 ProSitePatterns Protein kinases ATP-binding region signature. 23 46 IPR017441 GO:0005524
Glsi03g0606 451 ProSiteProfiles Protein kinase domain profile. 17 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi03g0606 451 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 8 434 - -
Glsi03g0606 451 SMART serkin_6 17 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi03g0606 451 CDD CIPK_C 322 437 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g0606 Glsi-ChrGlsi03 13214969 13216324 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi03g0606 6 445 CBL-interacting serine-threonine protein kinases AT5G45820 66.893 0.0 618
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Glsi03g0606 Pkinase 2.7e-75 CL0016