Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g0604 ATGGCGGACGTTGTTTCCAAGAAGGCCGACACGAATCTATTATTGGGTCGCTATGAAATTGGGAAGCTCCTCGGCCATGGAACTTTTGCCAAGGTCTATCATGCCCGGAACATCAAAACCGGTGATGGGGTCGCCATCAAGATCATCGACAAGGAGAAAATCCTTAAGGTTGGCTTAGTTGCCCACATCAAGCGCGAGATCTCTATCCTCCGCCGTGTGCGCCACCCGAACATCGTCCAACTGTTCGAGGTTATGGCTACGAAGACCAAGATCTACTTTGTAATGGAATACGTTCGTGGTGGTGAGCTATTCAGTAAGGTTGCCAAAGGGCGATTGAAAGAGGAGGTTGCAAGAAAATACTTTCAACAATTGATTTCTGCTGTTGGGTTCTGCCATGCCAGAGGGGTATATCATAGGGATCTCAAGCCTGAAAACCTATTACTTGACGAAAATGGTGATCTAAAAGTGTCTGATTTTGGTTTAAGTGCTGTGTCTGATCAAATTAGGCAGGATGGTCTGTTCCACACATTTTGTGGGACTCCTGCTTATGTTGCTCCAGAGGTTTTGGGTAGAAAAGGGTATGACGGTGCTAAGGTAGATATTTGGTCTTGTGGGGTTATTTTATTTGTTTTGATGGCTGGATATTTGCCTTTTCATGACCAGAATGTTATGGCAATGTATAAAAAGATTTACAAGGGTGAGTTCAGGTGTCCCAGGTGGTTTTCACCTGAATTAACTCGGCTATGTACGCGTCTTCTTGATACTAACCCACAAACCAGGATTGCCATTCCGGAGATTATGGAGAATAGGTGGTTCAAGAAAGGGTTCAAACAAATAAAATTTTATGTTGAGGATGATAGACTTTGTAGTGTTGATGATAAGCTGGACAATAAAGATGATATAGAATCACTTTCTGACTACTCAATATCAGAATCTGACTCAGAGTTAGAGACTAGAAGGAAGAATGCTTCACTGCCAAGACCAGCAAGTTTGAATGCATTTGACATTATATCATTTTCTCCAGGTTTCGATCTTTCTGGGTTGTTTGAGGAAAAAGGGGATGAGGCGAGGTTTGTGTCTGGTGCTCCAGTGTCAAAGATTATATCAAAATTGGAGGAAATTGCTCAATTGGTTAGCTTTACAGTGAGGAAGAAAGATTGCAGGGTGAGCTTGGAGGGTTCAAGAGAAGGGGTAAAGGGGCCATTGACCATAGCTGCAGAAATATTTGAATTAACACCTTCTTTGGTGGTAGTTGAGGTCAAGAAAAAAGGAGGAGACAAAGCAGAGTATGAGCAATTTCGTGACACCGAATTGAAACCTGGATTGCAGAATTTGATGATGGAAGAATCAGCAACTTCTTCTCACCTACCTACAGCTTCTGAACCTTTAGAACTACCTAGGGATACTGAATTTCCACCCTACATACCTTCAGATACTGAATAG 1443 0.4262 MADVVSKKADTNLLLGRYEIGKLLGHGTFAKVYHARNIKTGDGVAIKIIDKEKILKVGLVAHIKREISILRRVRHPNIVQLFEVMATKTKIYFVMEYVRGGELFSKVAKGRLKEEVARKYFQQLISAVGFCHARGVYHRDLKPENLLLDENGDLKVSDFGLSAVSDQIRQDGLFHTFCGTPAYVAPEVLGRKGYDGAKVDIWSCGVILFVLMAGYLPFHDQNVMAMYKKIYKGEFRCPRWFSPELTRLCTRLLDTNPQTRIAIPEIMENRWFKKGFKQIKFYVEDDRLCSVDDKLDNKDDIESLSDYSISESDSELETRRKNASLPRPASLNAFDIISFSPGFDLSGLFEEKGDEARFVSGAPVSKIISKLEEIAQLVSFTVRKKDCRVSLEGSREGVKGPLTIAAEIFELTPSLVVVEVKKKGGDKAEYEQFRDTELKPGLQNLMMEESATSSHLPTASEPLELPRDTEFPPYIPSDTE 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g0604 480 CDD STKc_SnRK3 17 271 - -
Glsi03g0604 480 Gene3D Kinase associated domain 1, KA1 327 447 - -
Glsi03g0604 480 MobiDBLite consensus disorder prediction 445 480 - -
Glsi03g0604 480 ProSiteProfiles NAF domain profile. 326 350 IPR018451 GO:0007165
Glsi03g0604 480 FunFam Non-specific serine/threonine protein kinase 328 446 - -
Glsi03g0604 480 FunFam Non-specific serine/threonine protein kinase 9 97 - -
Glsi03g0604 480 Gene3D Transferase(Phosphotransferase) domain 1 8 326 - -
Glsi03g0604 480 ProSiteProfiles Protein kinase domain profile. 18 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi03g0604 480 CDD CIPK_C 332 443 - -
Glsi03g0604 480 ProSitePatterns Protein kinases ATP-binding region signature. 24 47 IPR017441 GO:0005524
Glsi03g0604 480 Pfam Protein kinase domain 18 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi03g0604 480 SUPERFAMILY Protein kinase-like (PK-like) 14 284 IPR011009 -
Glsi03g0604 480 Pfam NAF domain 328 384 IPR004041 GO:0007165
Glsi03g0604 480 SMART serkin_6 18 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi03g0604 480 FunFam Non-specific serine/threonine protein kinase 8 321 - -
Glsi03g0604 480 ProSitePatterns Serine/Threonine protein kinases active-site signature. 136 148 IPR008271 GO:0004672|GO:0006468
Glsi03g0604 480 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 9 440 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g0604 Glsi-ChrGlsi03 13151554 13152996 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi03g0604 13 480 CBL-interacting serine-threonine protein kinases AT4G18700 79.193 0.0 757
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Glsi03g0604 Pkinase 2.1e-74 CL0016