Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g0601 ATGAAAATGAGACACTTTTGCAGATTCTTGATTCTTCTGGCGCTGGTTGCTCTTGCTGAATCATCATGCAACAGTAGTGAAGACCGAGACCTGGTGTTCAAGGCCTTCAAATCAGTCTCTGGATTCAACGTTTCCTGGTTCCAGACAGTGGGTTCCAACTGTTCTAATGCTCAAATTAGAACAATAACGCTTCCATCCAAGAATCTTAGTGGGACTATCTCATGGGGGTTTCTGAGGAACATGTCGAAGTTGCAGGTTCTTGATCTCTCTGGGAATTCTCTGCAGGGGCATGTGCCAAGCTGGTTCTGGGCAAGTTCGAGCTTAGGAGAAGTCAATCTTTCCAAGAACAAGTTTGGAGGGAGCGTTGGGTTCAAATCCATCTCGGAAAATGGCTCCTTTTCATCCCTTCGAATACTCAACCTCTCATACAACAGGTTCACCAATTTGGTTCATCTTTCTGGGCTTCCAGAGCTAGAAATCCTTAACCTTTCTCATAACAATCTGAAAACTCTACCCTCTGGGTTCCAAAGCCTCACCAAGCTACAGCAGCTTGACCTCTCAAGCTGCAGTATCAACGCAAATGTAAAACCCATTTCTGTTCTGCGGTCGTTGAACTACTTGGACTTGTCAAACAACTATTTGAATGGTAGTTTCCCTTCTGATTTCCCTCGTCTGAATAGCCTCCATTTCTTGAACATTTCTCATAATAACTTCCGAGCATTAGTTGGCTTAGATGAGTACAGGAAATTTGGCAAGTCAGCTTTCGTTCACGCTGGTAGCAATTTCAATTACAATGCATCCAAAACGCCATTTCTTCATTCTCCTCTGCATCAGCCATTTCACTCCCGAAAACAGAAACCTATTCACAAACAAACCATCGTGAAAAGACCCAATTCAAAATCCAAAACTCTGATTGTGGCAGTTTCCTCTGCTTCAGCTTTTGTCCTTGTTCTATTGTCTATCTGGGTATTTTGCATCTACAGAAAGAAGCAATTGGCCAAAAGAAACAAATGGGCGATCTCGAAACCGGTCCCATTGCCCATCAAGCTCGAGAAATCTGGGCCATTCGCGTTCGAGACAGAGTCAGGAACCTCATGGGTCGCTGACCTGAAGGAGCCATCGTCTGCACCGGTTATCATGTTCGAGAAGCCCCTGATGAACCTCAGTTTCAAGGACCTGATCGCTGCCACGTCACACTTCGGCAAGGACTCGCAGCTCGCCGAGGGCAGGTGTGGGCCCGTCTACAGAGCCGTCCTACCCGGTGACATCCACGTGGCAATCAAGGTTCTGGAAAACGCTAGAGACGTCGATTATGATGACGCCGTGGCCATGTTCGTTGACCTCTCCAAGCTAAAGCACCCCAATTTATTGCCCCTCTCCGGTTACTGCATTGCAGGTAAGGAAAAGCTGGTTTTGTACGAGTTTATGTCAAATGGCGACTTGGGTAGATGGCTACATGAGCTGCCAACGGGGGAGACTAACGTGGAGGATTGGAGTGGTGACACGTGGGAGATTCAAAATGGCGTCGGATCCCAGGCATCTTCTCCCGAAAAGATGGGTTGGTTAACACGACACCGTATTTCTGTCGGGATAGCCCGTGGGCTAGCGTATCTCCACCATGCTGGATCAAAACCCGCCGTGCACGGCCACCTAGTCACTTCGAATGTCTTACTCTCCGACGACTTCGAGCCCCGAATTGCCGATTTCGGGTTCCGAAAAATCGGACAGCAGAATGTCCCGAATTGCACCACAGAGACGGACGTTTACTGCTTCGGAGTGGTGCTAATGGAGTTATTGACGGGGAAATCCGGTACGGCGGAGACGGTGGTGTGGGCGAGGAAGCTAGTGAGGGAGGGGCACGGGGTGCGCGCCTTAGACGAGAGACTGGGACTCGGCCGCGACTCGGAGAAGGAGATGGTGGAGAGCCTCCGAGTCGCGTACTTGTGTACGGCCGAGTCACCAACGAAGAGACCCACCATGCAGCAGGTCCTGGGTTTGTTGAAAGACATTCATCCCCACGGGGGACTCGACCCGAGTTAA 2040 0.4956 MKMRHFCRFLILLALVALAESSCNSSEDRDLVFKAFKSVSGFNVSWFQTVGSNCSNAQIRTITLPSKNLSGTISWGFLRNMSKLQVLDLSGNSLQGHVPSWFWASSSLGEVNLSKNKFGGSVGFKSISENGSFSSLRILNLSYNRFTNLVHLSGLPELEILNLSHNNLKTLPSGFQSLTKLQQLDLSSCSINANVKPISVLRSLNYLDLSNNYLNGSFPSDFPRLNSLHFLNISHNNFRALVGLDEYRKFGKSAFVHAGSNFNYNASKTPFLHSPLHQPFHSRKQKPIHKQTIVKRPNSKSKTLIVAVSSASAFVLVLLSIWVFCIYRKKQLAKRNKWAISKPVPLPIKLEKSGPFAFETESGTSWVADLKEPSSAPVIMFEKPLMNLSFKDLIAATSHFGKDSQLAEGRCGPVYRAVLPGDIHVAIKVLENARDVDYDDAVAMFVDLSKLKHPNLLPLSGYCIAGKEKLVLYEFMSNGDLGRWLHELPTGETNVEDWSGDTWEIQNGVGSQASSPEKMGWLTRHRISVGIARGLAYLHHAGSKPAVHGHLVTSNVLLSDDFEPRIADFGFRKIGQQNVPNCTTETDVYCFGVVLMELLTGKSGTAETVVWARKLVREGHGVRALDERLGLGRDSEKEMVESLRVAYLCTAESPTKRPTMQQVLGLLKDIHPHGGLDPS 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g0601 679 SMART LRR_typ_2 201 225 IPR003591 -
Glsi03g0601 679 SMART LRR_typ_2 133 154 IPR003591 -
Glsi03g0601 679 SMART LRR_typ_2 155 177 IPR003591 -
Glsi03g0601 679 SMART LRR_typ_2 81 104 IPR003591 -
Glsi03g0601 679 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 48 670 - -
Glsi03g0601 679 Gene3D Ribonuclease Inhibitor 127 257 IPR032675 -
Glsi03g0601 679 ProSiteProfiles Leucine-rich repeat profile. 135 156 IPR001611 GO:0005515
Glsi03g0601 679 ProSiteProfiles Leucine-rich repeat profile. 157 179 IPR001611 GO:0005515
Glsi03g0601 679 Pfam Protein tyrosine and serine/threonine kinase 403 573 IPR001245 GO:0004672|GO:0006468
Glsi03g0601 679 ProSiteProfiles Protein kinase domain profile. 400 674 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi03g0601 679 FunFam Putative LRR receptor-like serine/threonine-protein kinase 361 475 - -
Glsi03g0601 679 Gene3D Phosphorylase Kinase; domain 1 360 475 - -
Glsi03g0601 679 Gene3D Transferase(Phosphotransferase) domain 1 581 674 - -
Glsi03g0601 679 Pfam Leucine rich repeat 61 118 IPR001611 GO:0005515
Glsi03g0601 679 Pfam Leucine rich repeat 135 191 IPR001611 GO:0005515
Glsi03g0601 679 PRINTS Leucine-rich repeat signature 155 168 - -
Glsi03g0601 679 PRINTS Leucine-rich repeat signature 84 97 - -
Glsi03g0601 679 FunFam Calmodulin-binding receptor kinase CaMRLK 134 244 - -
Glsi03g0601 679 SUPERFAMILY L domain-like 51 241 - -
Glsi03g0601 679 SUPERFAMILY Protein kinase-like (PK-like) 377 667 IPR011009 -
Glsi03g0601 679 Gene3D Ribonuclease Inhibitor 22 126 IPR032675 -
Glsi03g0601 679 Gene3D Transferase(Phosphotransferase) domain 1 476 580 - -
Glsi03g0601 679 SMART LRR_bac_2 225 244 - -
Glsi03g0601 679 SMART LRR_bac_2 133 152 - -
Glsi03g0601 679 SMART LRR_bac_2 155 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g0601 Glsi-ChrGlsi03 13000487 13003263 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi03g0601 62 670 Receptor kinase-like Gene Family AT5G07280 31.259 3.46e-71 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-2 Glsi03g0601 PK_Tyr_Ser-Thr 3.1e-20 CL0016