Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g0597 ATGGTTCATGCAAGAGGGCAAGACAGTGGTGAGGTATTGGATCATGCTGATGAAGGGATAGATAAGAAATTCAGCCTTTCGGTTGATGCAGTCAATGCAGTAGCAGGGGGCAGATGGGGTGAGAGGACTTGTGTGAATAGAGAAGATGGGACTTTAGGAGAGATGGATAATGATCCAGGATCAAATAAGGAAGTACAGGAGGGGCCTGAGGAAGTTATGGTTCATGACATGCGTGATCAGCAAAAAATCAGTGATGCATTGTATGGAGTTGATCAAAGAACTAGTTATAATTCAAGAGATTTGGTTCATGAGGGGGTACGTGACGCAGTGGTTATAATAGATTCTGCTGAGACAGAGAATGTGAACAGATACAATAGAGACTTTGAAGCAAAAGTTAAGGAATCAGGGCTGAGCAAGATATCCATGAAAGCACCAAAAACAGATAATGATTCATGTGTGAAGATTGATATGAATTGTGGCAGCTGCGAAGGGTTTAGTGAGAATTCGGATGGTGAAAGGATTTGTAGGATTTGCCATCTAGCTTCTGGGCAACCATCCGATGCAATATCTGTTAGCAGTATCACTAATGACATTGCTATTAGTGCAGATTTAATTCAGCTCGGTTGTGCGTGTAAAGATGAGCTAGGCATTGCCCACAGTCATTGTGCTGAGGCATGGTTCAAGCTAAAAGGAAGCAGATTGTGTGAAATATGCGGTGAGACTGCAAAGAATGTTTCGGGTGTTGCCGATGATGGATTTATGGAGGAGTGGAATGAAAGGAGATTCACTGACAGTGGTAGTACCTCATCAAGCAATTTTGGTGCATGCTGGCGGGGACAACCATTTTGTAACTTCTTGATGGCATGCCTGGTTATAGCTTTTGTTCTGCCATGGTTTTTTCGTGTAAATATGTTCTAG 918 0.427 MVHARGQDSGEVLDHADEGIDKKFSLSVDAVNAVAGGRWGERTCVNREDGTLGEMDNDPGSNKEVQEGPEEVMVHDMRDQQKISDALYGVDQRTSYNSRDLVHEGVRDAVVIIDSAETENVNRYNRDFEAKVKESGLSKISMKAPKTDNDSCVKIDMNCGSCEGFSENSDGERICRICHLASGQPSDAISVSSITNDIAISADLIQLGCACKDELGIAHSHCAEAWFKLKGSRLCEICGETAKNVSGVADDGFMEEWNERRFTDSGSTSSSNFGACWRGQPFCNFLMACLVIAFVLPWFFRVNMF 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g0597 305 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 159 249 IPR013083 -
Glsi03g0597 305 SUPERFAMILY RING/U-box 171 241 - -
Glsi03g0597 305 PANTHER ZINC FINGER, RING-CH-TYPE 63 305 - -
Glsi03g0597 305 ProSiteProfiles Zinc finger RING-CH-type profile. 167 245 IPR011016 GO:0008270
Glsi03g0597 305 SMART ringv_2 174 239 IPR011016 GO:0008270
Glsi03g0597 305 Pfam RING-variant domain 175 238 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g0597 Glsi-ChrGlsi03 12930499 12935384 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi03g0597 153 304 C3H Transcription Factor Family AT5G05830 38.854 4.24e-29 108