Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g0585 ATGGGAGCACCAACTGACGGAAATGGTATCAAGGGAAGAAAAAAATCATCATCCAGAGGCCACCATAGGTTTGTGGGTGTTCGTCAAAGACCATCAGGAAGATGGGTAGCAGAAATCAAGGATTCCCTACAAAAGGTTAGGCTTTGGCTTGGAACATTTGACACTGCAGAAGATGCAGCTCGTGCATATGATACTGCTGCTCGGGCTCTGCGGGCTCCTAATATGGGAAAACTTATGAGTCTGTGCATGTTTGAAATCCCTTCTGATCTATTTTATGAGATGAGAATCCAATTTGCACCTTATAAGTTGCCATGGAAGGAAAAGCAACTTGTACAGCCTGATTGATGTGAGGTTGCAGCTCGTTCTGTTTCAAAAGATGAAGTATTAGATTCCATGAGTGCTGAAATTTGCATCCGCATCGCTGAAATGAAGAGCTGTGATGAATGGAAACCTTTTCTAGTAATGATAGCTATTGATTTTGCTTTTGCAGTAGTGAATATCCTCCTCAAGAAAGTCCTTGAAGAGGGAATGAACCATTTGGTTTTCATCACATACCGATTGACAACTTCTTGCATTTTCTTAGCACCAATCGGCTACTTTTGGGAGAGAAAAGACAGACCAAGGCTCACATTTCGAATTTTATGTTACCTCTTCTTCAGTGCCATTGTTGGGACATCAGTCACACAGTATTTCTTCCTTCTGGGAATCCAATACACCTCTGCTACCTTTTCTTGTGCCTTTGTGAATATGGTGCCTGTGATCACATTCATTATGGCATTACCATTTGGGTTAGAGACTGTGAACATAAAATGCAACAGTGGGAGAGCAAAGATACTTGGCACAGTGGTGTGCATTGGTGGCGGATTGTTATTGACACTTTACAAAGGAAAACCCTTGTTTAGTTTTTCTCAATATGATTCTGCAGCTCCAATAGCCAAGACTTCTGCAGTGAAGTTGGCTTCTCCTATAAATACACAGAGATGGACCATTGGTGTAATAGCTTTGATTCTGGGAACCCTCTTTTGGTCTTCTTGGTTTCTTCTGCAATCAAATATAGGAAAAAGGTACCCATGCCAGTATTCTAGCACAGCCATCATGACCTTCTTTGGAGCCATTCAATCAGCTATTCTTAGTTTGGCCACTGGAAGGAACTTGTCAATGTGGGTTCTCAAGGGAAGGATGCAAATAATCACTGTTCTGTATTCTGGGATGGTTGGATCAGGTTTGTGCTTTGTGGGCATGTCATGGTGTGTGAAGAAAAGAGGTCCTGTGTTCACTGCAGCATTTAGCCCTCTTGTTCAGATAATGGCAGCCATGATTGATATCCCTGTGTTGCGTGAGCAGCTCCATCTTGGAAGTGTTTTGGGATCCATCTTGGTGATGATCGGATTGTACATTCTTCTATGGGGTAAGAAAAATGAGATGCAGAACCGCGTGACCAAGCTAGTCCAAGAAGCTGAAGAAACCAAGGAAGACGAGCCAGGAATACAGCAAATCACAGTGTCCTGTGATTCAAGGTGTTCTTGA 1527 0.427 MGAPTDGNGIKGRKKSSSRGHHRFVGVRQRPSGRWVAEIKDSLQKVRLWLGTFDTAEDAARAYDTAARALRAPNMGKLMSLCMFEIPSDLFYEMRIQFAPYKLPWKEKQLVQPDXCEVAARSVSKDEVLDSMSAEICIRIAEMKSCDEWKPFLVMIAIDFAFAVVNILLKKVLEEGMNHLVFITYRLTTSCIFLAPIGYFWERKDRPRLTFRILCYLFFSAIVGTSVTQYFFLLGIQYTSATFSCAFVNMVPVITFIMALPFGLETVNIKCNSGRAKILGTVVCIGGGLLLTLYKGKPLFSFSQYDSAAPIAKTSAVKLASPINTQRWTIGVIALILGTLFWSSWFLLQSNIGKRYPCQYSSTAIMTFFGAIQSAILSLATGRNLSMWVLKGRMQIITVLYSGMVGSGLCFVGMSWCVKKRGPVFTAAFSPLVQIMAAMIDIPVLREQLHLGSVLGSILVMIGLYILLWGKKNEMQNRVTKLVQEAEETKEDEPGIQQITVSCDSRCS 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g0585 508 PRINTS Ethylene responsive element binding protein signature 46 62 IPR001471 GO:0003700|GO:0006355
Glsi03g0585 508 PRINTS Ethylene responsive element binding protein signature 24 35 IPR001471 GO:0003700|GO:0006355
Glsi03g0585 508 PANTHER WAT1-RELATED PROTEIN 150 483 IPR030184 GO:0016020|GO:0022857
Glsi03g0585 508 CDD AP2 23 74 IPR001471 GO:0003700|GO:0006355
Glsi03g0585 508 SUPERFAMILY Multidrug resistance efflux transporter EmrE 185 295 - -
Glsi03g0585 508 MobiDBLite consensus disorder prediction 1 24 - -
Glsi03g0585 508 SMART rav1_2 23 90 IPR001471 GO:0003700|GO:0006355
Glsi03g0585 508 ProSiteProfiles AP2/ERF domain profile. 23 85 IPR001471 GO:0003700|GO:0006355
Glsi03g0585 508 Pfam AP2 domain 23 72 IPR001471 GO:0003700|GO:0006355
Glsi03g0585 508 SUPERFAMILY Multidrug resistance efflux transporter EmrE 392 472 - -
Glsi03g0585 508 Pfam EamA-like transporter family 153 290 IPR000620 GO:0016020
Glsi03g0585 508 Pfam EamA-like transporter family 330 468 IPR000620 GO:0016020
Glsi03g0585 508 Coils Coil 472 492 - -
Glsi03g0585 508 Gene3D AP2/ERF domain 22 77 IPR036955 GO:0003700|GO:0006355
Glsi03g0585 508 SUPERFAMILY DNA-binding domain 24 73 IPR016177 GO:0003677
Glsi03g0585 508 FunFam ethylene-responsive transcription factor RAP2-11 22 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g0585 Glsi-ChrGlsi03 12559101 12567159 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi03g0585 149 402 Nodulin-like Gene Family AT3G30340 51.575 8.51e-88 269
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Glsi03g0585 EamA 2.1e-13 CL0184