Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g0553 ATGACAAGGGCTGTGCACAATAGGATACTCAAGGATGCGAATGGTGATATTAGTGATCATCTACGCAACCACATCCATTTAACAAATTGCATTCACTTGAAGAACCATCTGCACAAGAACAGCCCCATTCTTACTGACAGGTCACTTATGAGGGATCTTGTTGTGCTGCAGAGGTCACGCTCTCTGAGAGACCCTTCTGCTAGTCCTCCTTCATGGCATTCACCTTCTATAATTGATGTGCTTTCGAAGAGGGTTGAAAATGATGCCATGGTTCAGGAGGAAAGAAGGTCTGTAGGAATAGAACGCAGGAAAGAAGGAAGGAGGTTATCAGGAACCTCACCACCTGTGGTTAGTTTAAGTACATCAAAAGTTGCTCCAGGTGATGTGAGCAGGGTTAATGATGGAGTCCCAGCAAGTAGAGATCGTAGTAGCAGGAGTGGAATTGGGGATGGGAGGAAAGTTGGGAGAGAAGAATCTGGTCGGAAGAGTGACAGGCCTGATTATTTGTGTCTCAGTGAAGAGCAACTTCTCAATCAACTTGGCAAAGATTTGGCAGAAGATGTCATTTCAAGGCACTCTGAATCTATAGAGAGACAGAGCAAGCATAGGGGGAAGCATGTTGAAGATGCTCAGGGGAAGACCCTTTCTGAGCAGCTGAATGATGTTCCACTGGATAGTGATGATTTAGCATCTTCCAACACAAATCTTCACGGAAGGTTTCCGAGGCAGGAGATAATTATTGAGGAGCCAGAAGCTAGCATGCGTGGTCATGGCAACAGAATGAATAAGGTAAAAAGACGTAAATTTCGAAGTGCAAGAAGAGCTCGGGCTTCTGTGGCATCTAGAGATACTGGAGCTGAGAATGAATTATCTGTGGCTTCCAACTCATTAGCTCATGGTTCAGTCCACCATAGATGTCACATGGAAGAGGCAGATGAATATGCAGATGAAAATGTCACTAGGGCACCCAAAAATGGGTGTGGCATTCCATGGAATTGGTCTAGAATTCATCACAGAGGTAAAACAATCCTTGACATGGCTGGAAGAAGTTTATCTTGTGGTTTATCTGACTCGAGGTTAAAGAAAGGAGCATTAGATGCCAATGGAAGAAATATTTCTGATATGCCTGTGGCATCTGACCGCTCTAGCTCATTTACTAAGTCTGATGCAGAGGAGGCACTACCTTTATTAGTTGAGGCATCTGGATCTCAAGGAAGCACTGAAAATGTTTGTTGGGGGCATGACTATTCTGGGGAACTTGGAATTTTTGCTGATAATTTATTCAAGCGTGATATTGATTCTGACCTCGCTTCTGAAGCTAGATCTGGTGGTCAGCATAAGTTGAGAGGGAACCACCATAGCAGGCACCAAAGCTTAACACAAAAATATTTGCCACGAACCTTCAGAGATATGGTTGGGCAGAATTTGGTGGCACAAGCTCTTTCAAACGCAGTCATGAGAAGGAAAGTTGGATTTTTGTATGTGTTTTATGGACCCCATGGCACTGGAAAAACTTCTTGTGCTCGCATATTTGCCAGAGCTTTAAATTGTCATTCTTCAGAACACCCGAAACCTTGTGGCTTCTGCAATTCTTGCATAGCCCATGATATGGGCAAGAGTAGAAATATAAGGGAAGTTGGTCCAGTCAGTAATTTTGACTTTGAGAGCATCATGGATCTACTTGAGAATATGATTGTTTCCAAGCTTCCATCACAGTACAGAGTGTTTATTTTTGATGACTGTGATACTCTGTCAGCTGATTGCTGGAGTGCCATATCGAAGGTCATTGATCGAGCACCTAGACGTGTGGTTTTTATACTTGTTAGTTCAAGTCTTGATGGATTGCCTCATATAATAATATCCAGGTGTCAGAAATTCTTTTTTCCGAAGCTGAAGGATTCAGACATTATGTATGCATTGCAGCGGATTGCAACCAAAGAAGGTCTCGAAATTGATAAGGATGCCCTGAAACTTATTGTATCAAGATCAGATGGATCATTGAGAGATGCTGAGATGACCCTTGAACAACTTAGTTTGCTTGGGCAGAGAATATCAGTTCCTCTTGTTCAGGAATTGGTAGGGCTAATCTCTGATGAGAAATTGGTCGATCTGCTTGATTTGGCATTATCTGCAGACACAGTTAACACTGTGAAGCATTTGAGAGTCATAATGGAAGCTGGTGTTGAGCCATTACCTTTAATGTCACAGCTTGCTACAGTGATTACTGATATACTTGCGGGGAGCTATGATTTCACAAAAGAAAGACAGAGAAGGAAGTTCTTTCGGAGACAGCCATTATCCAAAGAAGACATGGAAAAGCTACGCCAAGCTCTAAAAACATTATCTGAGGCTGAGAAGCAGTTGAGGATGTCCAATGATAAACTAACATGGCTGACAGCTGCATTGCTTCAACTTGCTCCTGACCAGCAATATATGTTGCCTACTTCATCTGATAATAGTTTCGATCATAGTCCCTTGGCCCTAAACAATGCAGATGGGAGAGAGGCAGCCAGAAGAATGAGTAATCATGTTGAAATTCCTAGCAAGGAGAGACGTTTATCAAAGGATGCTAGAATAGAGAATCTCCATGTTGGAAGTTCAGTTGATGGTATGACAAAGGGTCTTAGTTCAGATAAAAAAAGACTTCTTGTCGCTGGTTTTTCTCCTCAACAGACATCTTCAAATGTGACCATTAGGATGAATGACAGGCAGACTTTTGGTAAAAACCGTAAAGGAATTGAAGAGATATGGTTAGAGGTGCTTAACAGGATTCAAGTTAATGGTCTGAAAGAATTTTTATATCAAGAAGGAAAGCTGATCTTTGTTAGCTTTGGTGCAGCTCCAACTGTGCAGCTAGTGTTTAGTTCTCAATTGACCAAATCTACTGCTGAGAAGTTCAGGGGCCATATCTTACAAGCATTTGAATCTGTCCTTGGATCTTCTGTTACATTAGAAATTAGATGCGAATCAAATAAAGATGCAGGGTCGCAGTTTCAACGACCTCTTGTATTGCCTGCTGCTAAAGATAGTTTATCTCAGATTAGAGATTTAAATGGAGTTGGCACTCAAGCTCATCATTTGCAACCTGGTTCTGGTGAAAAGATGGGTGAAATTGTAGAAGAAGCAGCTTCTCCAACAGAGCGCAAGAGTAATGAGCAACACGCTGATGTTCATGCAGCATCTTGTGAAGGAACAAGTAGAGGACAGGCATCAACTTCCAACAAAAAGCCAATTGTGACTTCACACTTAGAAAGAAGGAAGCATAGGGAACAAAGTCAGAGTCGAAGTATTGTAAGAAGTAAGGTGTCTCTTGCTCATGTAATCCAGCAGGCTGAAGGACGTACACAGCGAAGTGGGTGGTCAAAACGTAAAGCAGTTTCCATAGCTGAGAAGCTTGAACAAGAGAATCTGCGACTGGAGCCAAGATCAAGGAGCTTGTTATGCTGGAAAGCATCAAGAGTAAACGGTCGGAAGCTTTCACGTTTGAAAGTTAGGACCAGAAAATCTCTTGCATTGCTGAACCTTGTCTCATGTGGGAAATGTCTGACTACTAAATCTCCAAGGTAG 3567 0.4233 MTRAVHNRILKDANGDISDHLRNHIHLTNCIHLKNHLHKNSPILTDRSLMRDLVVLQRSRSLRDPSASPPSWHSPSIIDVLSKRVENDAMVQEERRSVGIERRKEGRRLSGTSPPVVSLSTSKVAPGDVSRVNDGVPASRDRSSRSGIGDGRKVGREESGRKSDRPDYLCLSEEQLLNQLGKDLAEDVISRHSESIERQSKHRGKHVEDAQGKTLSEQLNDVPLDSDDLASSNTNLHGRFPRQEIIIEEPEASMRGHGNRMNKVKRRKFRSARRARASVASRDTGAENELSVASNSLAHGSVHHRCHMEEADEYADENVTRAPKNGCGIPWNWSRIHHRGKTILDMAGRSLSCGLSDSRLKKGALDANGRNISDMPVASDRSSSFTKSDAEEALPLLVEASGSQGSTENVCWGHDYSGELGIFADNLFKRDIDSDLASEARSGGQHKLRGNHHSRHQSLTQKYLPRTFRDMVGQNLVAQALSNAVMRRKVGFLYVFYGPHGTGKTSCARIFARALNCHSSEHPKPCGFCNSCIAHDMGKSRNIREVGPVSNFDFESIMDLLENMIVSKLPSQYRVFIFDDCDTLSADCWSAISKVIDRAPRRVVFILVSSSLDGLPHIIISRCQKFFFPKLKDSDIMYALQRIATKEGLEIDKDALKLIVSRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLISDEKLVDLLDLALSADTVNTVKHLRVIMEAGVEPLPLMSQLATVITDILAGSYDFTKERQRRKFFRRQPLSKEDMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQYMLPTSSDNSFDHSPLALNNADGREAARRMSNHVEIPSKERRLSKDARIENLHVGSSVDGMTKGLSSDKKRLLVAGFSPQQTSSNVTIRMNDRQTFGKNRKGIEEIWLEVLNRIQVNGLKEFLYQEGKLIFVSFGAAPTVQLVFSSQLTKSTAEKFRGHILQAFESVLGSSVTLEIRCESNKDAGSQFQRPLVLPAAKDSLSQIRDLNGVGTQAHHLQPGSGEKMGEIVEEAASPTERKSNEQHADVHAASCEGTSRGQASTSNKKPIVTSHLERRKHREQSQSRSIVRSKVSLAHVIQQAEGRTQRSGWSKRKAVSIAEKLEQENLRLEPRSRSLLCWKASRVNGRKLSRLKVRTRKSLALLNLVSCGKCLTTKSPR 1188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g0553 1188 CDD HLD_clamp_pol_III_gamma_tau 631 694 IPR045085 -
Glsi03g0553 1188 MobiDBLite consensus disorder prediction 1041 1056 - -
Glsi03g0553 1188 Gene3D - 449 628 IPR027417 -
Glsi03g0553 1188 MobiDBLite consensus disorder prediction 113 127 - -
Glsi03g0553 1188 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 493 678 IPR027417 -
Glsi03g0553 1188 MobiDBLite consensus disorder prediction 193 212 - -
Glsi03g0553 1188 MobiDBLite consensus disorder prediction 145 167 - -
Glsi03g0553 1188 Pfam DNA polymerase III subunits gamma and tau domain III 687 807 IPR022754 GO:0003887
Glsi03g0553 1188 MobiDBLite consensus disorder prediction 92 109 - -
Glsi03g0553 1188 SUPERFAMILY post-AAA+ oligomerization domain-like 702 805 IPR008921 GO:0003677|GO:0006260
Glsi03g0553 1188 Pfam DNA polymerase III, delta subunit 474 631 - -
Glsi03g0553 1188 FunFam DNA polymerase III subunit gamma/tau 453 630 - -
Glsi03g0553 1188 MobiDBLite consensus disorder prediction 1079 1095 - -
Glsi03g0553 1188 MobiDBLite consensus disorder prediction 92 167 - -
Glsi03g0553 1188 MobiDBLite consensus disorder prediction 1064 1078 - -
Glsi03g0553 1188 SMART AAA_5 490 631 IPR003593 GO:0016887
Glsi03g0553 1188 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 460 845 - -
Glsi03g0553 1188 NCBIfam DNA polymerase III subunit gamma/tau 457 805 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
Glsi03g0553 1188 Coils Coil 767 794 - -
Glsi03g0553 1188 Gene3D - 632 694 - -
Glsi03g0553 1188 MobiDBLite consensus disorder prediction 1041 1097 - -
Glsi03g0553 1188 MobiDBLite consensus disorder prediction 256 287 - -
Glsi03g0553 1188 MobiDBLite consensus disorder prediction 439 459 - -
Glsi03g0553 1188 MobiDBLite consensus disorder prediction 259 275 - -
Glsi03g0553 1188 FunFam DNA polymerase III subunit gamma/tau 632 694 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g0553 Glsi-ChrGlsi03 10994051 11001883 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi03g0553 457 743 Core DNA Replication Machinery Family AT1G21690 23.875 7.00e-13 69.7