Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g0540 ATGGCTTCAGGGGCTATATGCTCGTCGCTGCGGCGGCGGAGGTCGCCGTCGTTGGAAGCCTTTCTCGCTCCGGTTGACTTGACCGATGTTGCTCTGGTTCAAACCCTCCTCTCTGTTGCTAGCGAGCTCGTCTCGTGCTTTTCCGAGCGCTCCTTCTTCTTTCAGCGCAAGAATTCGCGGTCGCTTATACGGAAGGTCGAGGTTTTTCAGTTACTTTTGGAGTATTTGAGAGATACCGGCACGGGTCTTCCGACAACGGCAGTGCTTTGTTTCAAGGAGCTTTATTTGCTACTGTACAGGTCGAAGATTCTTCTTGATTATTGCGCGCAATCGAGTAAGTTATGGCTTTTGCTTCAGAATCATTCAATTTCTGGCCATTTTCATGATTTGAACCAAGAAATATCCACCCTTCTGGATGTATTTCCGATGAAGAATGTTGAATTGAGTGAGGATGTCAGAGAACAGATTGAGCTATTGCAGAAACAGTCAAGGAGGGCAAAGTTCTTTATAGACAAAAACGATGATGCGCTCAGGATTCGCTTCTTTTCATTTCTTGATGAGGTTGAGAATGGGAAGATTCCTGATTCAGCAGAACTACTGTCTCTCTTTGTGGAGAAATTGCAGATTCTGGATGCTCGGAGTTGCAGAACTGAAATTGAATCTTTGGAGGAGCAGATTGTCAATCATGAGGGAGACATTGAGCCAACAATGTCTGTGCTTAATGGGCTTGTTGCGTTGACACGGTATTGCAGATTTTTGCTTTTCGGATTTGAGGAAGATGAGCTAGATTTAAGAAATGGGAATAAGAAAAAGCCCAAAAGGGGATTGATTAGTCAAGAAATTGCTGAAACATTTTTAACTATTCCAAAGGACTTTTGCTGCCCAATATCATTGGATTTGATGCGAGACCCAGTAATAATCTCCACAGGACAGACTTATGATCGGAGTTCCATATCCAGGTGGATGGAAGAAGGCCATTGCACTTGCCCGAAAACTGGGCAAATGCTTGCTCACAAACGCCTTGTTCCTAATCGGTCTCTGAGAAATTTGATCATGCAGTGGTGCACTGCGCATGGAATCCCTTATGACCCGCCAGAGGTCATGGATGCTTCAGCTGAAATTTTTGCCCCAGCTTGTCCCACAAAAGCTGCTCTTGAAGCCAACAGAGCAACAGCAGCACTTCTAATTCAACAGCTTGCAAATGGCTCACAAGTTGCAAAGACTGTAGCTGCTAGGGAGATACGATTGCTAGCAAAAACAGGCAAGGAAAACCGTGCCTTCATTGCAGAAGCTGGGGCAATTCCTCATCTTCGGAAGTTACTTTCATCTCCTAACTCTGTTGCTCAGGAGAATTCTGTGACTGCATTGCTCAACCTGTCCATTTATGACAGAAACAAAAGTCGGATTATGGAGGAGGAAGGGTGTCTGGGATCAGTAGTTGATGTGCTGAGATTTGGGCACACGACAGAGGCAAGGGAAAATGCTGCTGCTACATTGTTCAGTCTCTCTGCTGTCCATGACTATAAGAAGAGAATTGCAGATAGGGCGGGAGCTGTTGAAGCCCTGGCAGGGCTGTTGCAAGAGGGGACACCAAGAGGAAAGAAGGATGCTGTAACAGCATTATATAATCTTTCCACTCACACTGAGAATTGTATTAGAATGATTGAGGCAGGGGCAGTAACAGCTCTAGTTGAGGCTTTGGGAAATGAAGGAGTTGCTGAGGAAGCCGCAGGTTCCCTGGCCTTGATTGTTCGGCAGCCTATTGGGGCCAAAGCAGTGGTTAGGGAGGAAGCAGCAGTAGCTGGATTAATGGGAATGATGCGTTGTGGTACACCAAGGGGTAAAGAGAATGCAGTTGCCGCCTTGCTGGAGTTGTGCCGGAGTGGCGGTGCAGTTGCAACTGAAAAGGTGGTTAGGGCACCAGCTTTGGCTGGATTACTTCAAACCCTGCTGTTTACAGGAACAAAGCGGGCAAGACGTAAGGCAGCTTCACTTGCTAGGGTGTTTCAAAGATCTGAAAATGCAACTCTACATTATGGTGGTTTAGGTGTTGGGTATGCATTTGCTAGCAATTCAGCTGAGAGGGATACAAGCTTTGCCGGGGATGTCTCAATACCAGTGTCCATTTCTGTCCCTGTTTTGTAG 2145 0.4648 MASGAICSSLRRRRSPSLEAFLAPVDLTDVALVQTLLSVASELVSCFSERSFFFQRKNSRSLIRKVEVFQLLLEYLRDTGTGLPTTAVLCFKELYLLLYRSKILLDYCAQSSKLWLLLQNHSISGHFHDLNQEISTLLDVFPMKNVELSEDVREQIELLQKQSRRAKFFIDKNDDALRIRFFSFLDEVENGKIPDSAELLSLFVEKLQILDARSCRTEIESLEEQIVNHEGDIEPTMSVLNGLVALTRYCRFLLFGFEEDELDLRNGNKKKPKRGLISQEIAETFLTIPKDFCCPISLDLMRDPVIISTGQTYDRSSISRWMEEGHCTCPKTGQMLAHKRLVPNRSLRNLIMQWCTAHGIPYDPPEVMDASAEIFAPACPTKAALEANRATAALLIQQLANGSQVAKTVAAREIRLLAKTGKENRAFIAEAGAIPHLRKLLSSPNSVAQENSVTALLNLSIYDRNKSRIMEEEGCLGSVVDVLRFGHTTEARENAAATLFSLSAVHDYKKRIADRAGAVEALAGLLQEGTPRGKKDAVTALYNLSTHTENCIRMIEAGAVTALVEALGNEGVAEEAAGSLALIVRQPIGAKAVVREEAAVAGLMGMMRCGTPRGKENAVAALLELCRSGGAVATEKVVRAPALAGLLQTLLFTGTKRARRKAASLARVFQRSENATLHYGGLGVGYAFASNSAERDTSFAGDVSIPVSISVPVL 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g0540 714 Pfam Armadillo/beta-catenin-like repeat 422 460 IPR000225 GO:0005515
Glsi03g0540 714 Pfam U-box domain 288 358 IPR003613 GO:0004842|GO:0016567
Glsi03g0540 714 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 287 362 IPR013083 -
Glsi03g0540 714 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 432 474 IPR000225 GO:0005515
Glsi03g0540 714 SMART arm_5 547 585 IPR000225 GO:0005515
Glsi03g0540 714 SMART arm_5 506 546 IPR000225 GO:0005515
Glsi03g0540 714 SMART arm_5 463 504 IPR000225 GO:0005515
Glsi03g0540 714 SMART arm_5 421 461 IPR000225 GO:0005515
Glsi03g0540 714 SMART arm_5 586 627 IPR000225 GO:0005515
Glsi03g0540 714 PANTHER U BOX DOMAIN-CONTAINING 58 669 - -
Glsi03g0540 714 ProSiteProfiles U-box domain profile. 287 361 IPR003613 GO:0004842|GO:0016567
Glsi03g0540 714 SMART Ubox_2 291 354 IPR003613 GO:0004842|GO:0016567
Glsi03g0540 714 FunFam RING-type E3 ubiquitin transferase 272 367 - -
Glsi03g0540 714 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 517 559 IPR000225 GO:0005515
Glsi03g0540 714 FunFam RING-type E3 ubiquitin transferase 364 685 - -
Glsi03g0540 714 Coils Coil 212 232 - -
Glsi03g0540 714 Gene3D - 508 667 IPR011989 -
Glsi03g0540 714 SUPERFAMILY ARM repeat 394 671 IPR016024 -
Glsi03g0540 714 SUPERFAMILY RING/U-box 276 362 - -
Glsi03g0540 714 Gene3D - 372 507 IPR011989 -
Glsi03g0540 714 CDD RING-Ubox_PUB 289 341 IPR045210 -
Glsi03g0540 714 Gene3D - 27 144 IPR036537 GO:0007166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g0540 Glsi-ChrGlsi03 10333041 10335185 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi03g0540 1 714 U-box Gene Family AT1G29340 70.708 0.0 970