Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g0536 ATGGATGAAGCTCAGGGCAATTCGAGTTCTTTGCCTCCTTTCTTGGCGAAGACCTATGATATGGTAGACGATCCTTCCTCAGATTCGGTTGTTTCTTGGAGTACCACAAATAAAAGTTTCATAGTATGGGATCCCCCAGAATTTGCAAGGGATTTGCTACCAAGATTCTTTAAGCATAATAACTTCTCAAGTTTCATAAGACAGCTGAACACTTATGGTTTTAGAAAAATTGACCCAGAACGATGGGAATTTGCAAATGATGATTTTGTGAGGGGTCAACCACATCTTATGAAGAATATCCACAGACGAAAACCGGTTCATAGCCATTCTTTACAGAATCTCCAAGGACAAGGAGCTTCTCCATTAACGGAGTCAGAAAGGCAGAGTTTAAAAGACGAAACAGAGAGGCTTAAACATGATAAAGAACGGCTTCTTCTTGAGTTTCAGAGATTCCAACAGGAGTGGAAAACATATGATATACAAATACATTGCTCAAGGGAGCGTTTGGAAAGATTGGAACAGAATCAACAAAAGATGGTCTCTTCTGTTTCTCGGGTGTTGCAGAAACCTGGAGTTGCTTTAAATCTCTTGCCACTGTCAGCCCCCCTGGATAGAAAACGAAGGTTGCCAAGAAGTAGGTACTTTTGTGATGATGCCAGCATTGAAGATCCTATGGAAACTTCCCAAACGTTATCTAGAGAAAATGTAGAGAGTACCTCTGTTCTGACATCAAACATGGAGCGATTAGATCAGCTGGAGTCATCAATAGTATTTTGGGAGAACATCGCACAAGATGTTGGTGACACCTTTGTCCAAGGTGTCCAAAGTCATGCAAACTTGGACTTTGATGATTCAACAAGTTGTCCTGATAGTCCAACTGTATCGTGTGTGCAACTAGATGTTGAAATTCAGCCTAGGTCTTCTGGAATTGACATGAACTCTGAGCCTGCTGCGTCTGCTGTTCCAGAGCTTGTTGCATCAAAAGAACAGCCTGTGGGAACCGCCACTGTGGCAACTGGTGTTAATGATGTATTCTGGGAACAGTTCTTGACAGAGAATCCTGGTTCATCAGAAACACAGGAAGCGCTGTCAGAAATAAAGAATTCTGATGCCATAAAGAATGAAGGAAAACCCAGTGATCGAATTAAATTTTGGTGGAATGTGCATAATGTAAATAACCTTCCAGAGCAGATCGGGCATATTAGTCAAGCAGAGAAAACTTAA 1224 0.415 MDEAQGNSSSLPPFLAKTYDMVDDPSSDSVVSWSTTNKSFIVWDPPEFARDLLPRFFKHNNFSSFIRQLNTYGFRKIDPERWEFANDDFVRGQPHLMKNIHRRKPVHSHSLQNLQGQGASPLTESERQSLKDETERLKHDKERLLLEFQRFQQEWKTYDIQIHCSRERLERLEQNQQKMVSSVSRVLQKPGVALNLLPLSAPLDRKRRLPRSRYFCDDASIEDPMETSQTLSRENVESTSVLTSNMERLDQLESSIVFWENIAQDVGDTFVQGVQSHANLDFDDSTSCPDSPTVSCVQLDVEIQPRSSGIDMNSEPAASAVPELVASKEQPVGTATVATGVNDVFWEQFLTENPGSSETQEALSEIKNSDAIKNEGKPSDRIKFWWNVHNVNNLPEQIGHISQAEKT 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g0536 407 Gene3D - 6 104 IPR036388 -
Glsi03g0536 407 MobiDBLite consensus disorder prediction 109 125 - -
Glsi03g0536 407 ProSitePatterns HSF-type DNA-binding domain signature. 53 77 IPR000232 GO:0003700|GO:0006355|GO:0043565
Glsi03g0536 407 SUPERFAMILY "Winged helix" DNA-binding domain 9 103 IPR036390 -
Glsi03g0536 407 SMART hsfneu3 10 103 IPR000232 GO:0003700|GO:0006355|GO:0043565
Glsi03g0536 407 PRINTS Heat shock factor (HSF) domain signature 52 64 IPR000232 GO:0003700|GO:0006355|GO:0043565
Glsi03g0536 407 PRINTS Heat shock factor (HSF) domain signature 14 37 IPR000232 GO:0003700|GO:0006355|GO:0043565
Glsi03g0536 407 PRINTS Heat shock factor (HSF) domain signature 65 77 IPR000232 GO:0003700|GO:0006355|GO:0043565
Glsi03g0536 407 MobiDBLite consensus disorder prediction 105 134 - -
Glsi03g0536 407 FunFam Heat shock transcription factor 1 7 104 - -
Glsi03g0536 407 Pfam HSF-type DNA-binding 14 103 IPR000232 GO:0003700|GO:0006355|GO:0043565
Glsi03g0536 407 Coils Coil 127 154 - -
Glsi03g0536 407 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 6 285 IPR027725 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g0536 Glsi-ChrGlsi03 10236809 10238138 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi03g0536 8 407 HSF AT4G18880 50.980 3.62e-123 360
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Glsi03g0536 HSF_DNA-bind 1.1e-31 CL0123