Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g0529 ATGGCTGAGAATTCAGCAAGTAATGGAACCCACGAGGTGGCTTTGAATGTTAACGGCGAAGCCAACCGTAATCTTAATCGCTCTGCCTCCAAAGCAAACGAAGACTCAGGCATCTATGTCTCTGTGCCTTTCTTGCAGAAGTTGGTGGCAGAGTTCGTGGGGACGTACTTCTTGATATTTGCAGGTTGTGCGGCGGTGGTGGTGAACAAGGACAACAACAATGTGGTGACGCTGCCCGGGATTTCAATAGTTTGGGGCCTGGTTGTGATGGTGCTGGTCTACTCTGTTGGTCACATCTCTGGTGCCCATTTCAACCCTGCTGTCACCCTTGCTTTTGCTTCCACCAGAAGGTTTCCCTTGAAACAGGTGCCGGCTTATATATCAGCTCAGGTCCTTGGGTCAACGCTAGCAAGTGGAACTCTGAGGCTTCTTTTTAGCGGCAGCAAGGACCAATTTGCAGGAACACTTCCAAGTGGGTCAAACTTGCAGGCTTTTGTGATTGAATTTATAATCACTTTCTACCTCATGTTCGTCATATCTGGCGTCGCTACTGATAACAGAGCGATTGGTGAGCTGGCTGGACTTGCAGTTGGGTCTACGGTGCTGCTGAATGTGATGTTCGCAGGGCCGGTCACAGGAGCATCAATGAACCCAGCAAGAAGCTTGGGACCCGCAATTGTGTCCCATGAATACAGAAGAATATGGATATACTTGCTATCACCGACTTTAGGGGCAGTGGCTGGGGCATGGATCTACAATATCATCAGGTATACTGACAAGCCATTGCGTGAGATCACTAAGAGTGCCTCTTTCCTCAAAGGAGCAGGACGTGGGGGCTCCAAGTGA 846 0.4965 MAENSASNGTHEVALNVNGEANRNLNRSASKANEDSGIYVSVPFLQKLVAEFVGTYFLIFAGCAAVVVNKDNNNVVTLPGISIVWGLVVMVLVYSVGHISGAHFNPAVTLAFASTRRFPLKQVPAYISAQVLGSTLASGTLRLLFSGSKDQFAGTLPSGSNLQAFVIEFIITFYLMFVISGVATDNRAIGELAGLAVGSTVLLNVMFAGPVTGASMNPARSLGPAIVSHEYRRIWIYLLSPTLGAVAGAWIYNIIRYTDKPLREITKSASFLKGAGRGGSK 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g0529 281 FunFam Aquaporin NIP1-1 8 265 - -
Glsi03g0529 281 Pfam Major intrinsic protein 41 252 IPR000425 GO:0015267|GO:0016020|GO:0055085
Glsi03g0529 281 ProSitePatterns MIP family signature. 103 111 IPR022357 -
Glsi03g0529 281 PANTHER AQUAPORIN NIP2-1 31 272 IPR034294 -
Glsi03g0529 281 Gene3D Glycerol uptake facilitator protein. 4 267 IPR023271 -
Glsi03g0529 281 PRINTS Major intrinsic protein family signature 122 141 IPR000425 GO:0015267|GO:0016020|GO:0055085
Glsi03g0529 281 PRINTS Major intrinsic protein family signature 198 220 IPR000425 GO:0015267|GO:0016020|GO:0055085
Glsi03g0529 281 PRINTS Major intrinsic protein family signature 85 109 IPR000425 GO:0015267|GO:0016020|GO:0055085
Glsi03g0529 281 PRINTS Major intrinsic protein family signature 46 65 IPR000425 GO:0015267|GO:0016020|GO:0055085
Glsi03g0529 281 PRINTS Major intrinsic protein family signature 235 255 IPR000425 GO:0015267|GO:0016020|GO:0055085
Glsi03g0529 281 PRINTS Major intrinsic protein family signature 167 185 IPR000425 GO:0015267|GO:0016020|GO:0055085
Glsi03g0529 281 NCBIfam MIP family channel protein 50 252 IPR000425 GO:0015267|GO:0016020|GO:0055085
Glsi03g0529 281 SUPERFAMILY Aquaporin-like 40 266 IPR023271 -
Glsi03g0529 281 CDD MIP 46 255 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g0529 Glsi-ChrGlsi03 10054275 10056596 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi03g0529 42 273 Major Intrinsic Protein MIP AT5G37810 62.069 4.41e-106 308