Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g0525 ATGGTCCATACATGCGTGTTTCTCTTTCCTTTTATCTTGGCTTTTCCTCCCGTCAAACTGCGTATTTTCTTAGCTGATAATCCAAAGGTACCACTTTTCAGCCTATTTGGTGATCCTAGTGACCTCACAAGGCATCGTTCTGTGAGCTCTGAGTCTTCGAGCATGCTGGCAGCTGGGAACTTCGTTGCTTTCTTAATTATTGCGTTGAGTTGTTTTAGATGGCTAAGATATGCAGAATCAAAACTACCCCAAGAAGAAGTTGATGCTCTTCAAGAAATTACCCGTACGATGGGTGCCACCTATTGGGAATTTGATGGTGATTCTTGTCAAATTAAAGTAGTAGGGTTAACACCAGAGCCACCTAATGGATCTCAGAGCAGCATTGATTGTGAATGTTCTTCTGAAAAAGAACCTGCCTGTCATGTGGTGAAGATCATGCTCAAGGGGTACAGCCTTCCTGGCCTGCTTCCACCTCAACTGGTCAAGCTTCCTTACCTCAGAGAAGTTGATTTTGCTCTCAATTACTTAAATGGTTCAATCCCTAAGGAATGGACTTCAATGAAATTATCTTCAATCTCTCTTCTTGTGAATCGCTTATCAGGGGAAATTCCTAAGGAGTTGGGAAAGATGACCAGTCTAACATACCTTAACCTTGAAGCAAACCAATTTTCTGGTCTTGTTCCCTCTAAGCTTGGAAGTCTAATTAACTTGCAGACTTTCATTCTATCATCTAATAAGTTGTCTGGAAACTTACCGGTGACATTTTCTCAGCTACAGAATTTGACAGATTTTAGGATAAATGATAACAATTTCAGTGGGACAATACCTAATTTCATACAGAATTGGAAACTACTTCAAAGACTAGAAATCCATGCAAGTGGACTGGAGGGACCCATCCCATCAAATATATCTCTTTTGAGTAATTTAGTTCAACTGAGAATTAGTGATATATCTAGTCCAAGTCAGGATTTTCCTTCCCTAAGGAATATGACAGCAATGATAAGATTGGTTTTAAGAAATTGTAATATTACTGGAGAGCTTCCTGCCTACATCTGGACAATGCAGGATTTGCAAATGTTGGATGTCAGTTTTAATAAGTTAGTTGGGGAAATTCCAGCAACCGTGAGTGCAAGGCGTCTGAAATTTGTCTTCCTGACTGGCAACATGCTAAGTGGAATTATACCAGACTCAATCTTGATGGAGGGAAGCAATGTTGATCTTTCTTACAACAACTTTACACAGCAAGGTCCTGAGCAATCTGCTTGTCGAGATGACCTTTGTTTGCATGTTAATAGTGGCGGAAAGGATGTAATGGTGATTGAAAACAAAGAAAATATATTCTATATAGGAGATGGAGATGTGTTAGGTGGTACTGCAAAATATTATAGTGATGACAATAATCACTGGGGGCTCAGTAGCACTGGGGATTTCATGGATGATAATAATTTTCAAAATACACGTTACACTGTGTTTCTGGCATCTTCAGATATGCATGATATATATACAACAGCACGTGTGTCTCCAATTTCACTGACGTATTTTCACTATTGCTTGGAGAATGGGAATTATACTGTAAAACTGCACTTTGCAGAAATACAATTTACAAATGATAAGACATATGGAAGTCTTGGGAAGCGCTTTTTTGATATCTATGTTCAGGAAAAAATAGTTAGGAAGGATTTCAATATTGAAGATGAAGCACATATTGCTCAAAAACCACTTATAATACCAATAGATAATGTCACAGTAACTGACAATGTCCTGGAGATTCGATTCTATTGGGCTGGAAAAGGGACAACACGGATTCCTCACGGTGGAGTTTATGGTCCTCTGGTATCAGCTCTATCTATCGTTTCTGACTCTAAACCTTGTTCCAATGGTCAAAAAAAGGGAAGTGCCAATATAAAAATTGGAGTTGGAGCTGGAGTTGGAGCCCTTTTCCTAGTACTTGTTATTATGGGAATCCTTTGGTGGAAGAGCTGCTTCAAAGGAATATTTGGGGGAGAAAAAGGTATGAAAGGACTAGATTCTCAGATGGGAACATTTAGCCTAAATCAGATAAGAGCTGCCACTGATGACTTCAGTCCTGATAACAAGATTGGGGAAGGTGGTTTTGGTCCAGTCTACAAGGGTCAACTATCTGATGGCAATAAAAATCAGCTTAAACTTGATTGGCCCACAAGGCTTAGGATCTGTATTGGCATAGCAAAAGGTCTTGCATTTCTTCATGAAGAATCAAGATTCAAGATTGTTCACCGAGATATCAAGGCTACTAATGTGTTATTGGATGGGAATTTAAACCCTAAAATATCTGACTTTGGGTTGGCTAGGCTTGATGAAGAGGAGAAGACTCATATCAGCACCCGGGTGGCTGGCACTATAGGATATATGGCACCAGAATATGCATTATGGGGATACCTTACTGACAAGGCAGATGTCTACAGTTTTGGAGTTGTGGTCTTGGAAATTATTAGCGGGCAAAGCAACAATAATTATATGCCAAGTGATAATTGTGTTTGTCTTTTGGATTGGGCATGTCATCTGCAAAGAACTGCAAACATCATGAAACTGGTTGATCAAAGATTGGGATCCAAAGTAAACCCAACCGAAGCAGAAATCTTGGTGAAAGTAGCTCTCCTATGCACTAATGTATCGCCATCACTTAGGCCTTCGATGTCTGAGGTTGTGAACATGCTGGAAGGAAGAATGAGCATTCCCGAGGTTAACCCAGAACAAAGTGCTTTCAGTGAAGATTCAAGGTTCAAGGTCTTGAGAGACATCCATCGAGACAGAGAAAGACAGAGTTCAAGCACAAGCCAAACAGAAAACTCAAAAGAAGTCCTTATAGATAGTTCTTCTTCAATATTTGACCACGATTTACATGAGATAAGCACAGAACCATAA 2904 0.397 MVHTCVFLFPFILAFPPVKLRIFLADNPKVPLFSLFGDPSDLTRHRSVSSESSSMLAAGNFVAFLIIALSCFRWLRYAESKLPQEEVDALQEITRTMGATYWEFDGDSCQIKVVGLTPEPPNGSQSSIDCECSSEKEPACHVVKIMLKGYSLPGLLPPQLVKLPYLREVDFALNYLNGSIPKEWTSMKLSSISLLVNRLSGEIPKELGKMTSLTYLNLEANQFSGLVPSKLGSLINLQTFILSSNKLSGNLPVTFSQLQNLTDFRINDNNFSGTIPNFIQNWKLLQRLEIHASGLEGPIPSNISLLSNLVQLRISDISSPSQDFPSLRNMTAMIRLVLRNCNITGELPAYIWTMQDLQMLDVSFNKLVGEIPATVSARRLKFVFLTGNMLSGIIPDSILMEGSNVDLSYNNFTQQGPEQSACRDDLCLHVNSGGKDVMVIENKENIFYIGDGDVLGGTAKYYSDDNNHWGLSSTGDFMDDNNFQNTRYTVFLASSDMHDIYTTARVSPISLTYFHYCLENGNYTVKLHFAEIQFTNDKTYGSLGKRFFDIYVQEKIVRKDFNIEDEAHIAQKPLIIPIDNVTVTDNVLEIRFYWAGKGTTRIPHGGVYGPLVSALSIVSDSKPCSNGQKKGSANIKIGVGAGVGALFLVLVIMGILWWKSCFKGIFGGEKGMKGLDSQMGTFSLNQIRAATDDFSPDNKIGEGGFGPVYKGQLSDGNKNQLKLDWPTRLRICIGIAKGLAFLHEESRFKIVHRDIKATNVLLDGNLNPKISDFGLARLDEEEKTHISTRVAGTIGYMAPEYALWGYLTDKADVYSFGVVVLEIISGQSNNNYMPSDNCVCLLDWACHLQRTANIMKLVDQRLGSKVNPTEAEILVKVALLCTNVSPSLRPSMSEVVNMLEGRMSIPEVNPEQSAFSEDSRFKVLRDIHRDRERQSSSTSQTENSKEVLIDSSSSIFDHDLHEISTEP 967
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g0525 967 Gene3D - 424 622 - -
Glsi03g0525 967 MobiDBLite consensus disorder prediction 926 953 - -
Glsi03g0525 967 FunFam Probable LRR receptor-like serine/threonine-protein kinase RFK1 88 251 - -
Glsi03g0525 967 FunFam Probable LRR receptor-like serine/threonine-protein kinase RFK1 320 438 - -
Glsi03g0525 967 Pfam Protein tyrosine and serine/threonine kinase 720 899 IPR001245 GO:0004672|GO:0006468
Glsi03g0525 967 SMART serkin_6 694 899 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi03g0525 967 FunFam Putative LRR receptor-like serine/threonine-protein kinase 708 911 - -
Glsi03g0525 967 ProSitePatterns Serine/Threonine protein kinases active-site signature. 750 762 IPR008271 GO:0004672|GO:0006468
Glsi03g0525 967 Gene3D Ribonuclease Inhibitor 321 423 IPR032675 -
Glsi03g0525 967 Gene3D Ribonuclease Inhibitor 251 320 IPR032675 -
Glsi03g0525 967 SUPERFAMILY Protein kinase-like (PK-like) 677 921 IPR011009 -
Glsi03g0525 967 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 425 620 - -
Glsi03g0525 967 FunFam Putative LRR receptor-like serine/threonine-protein kinase isoform A 252 318 - -
Glsi03g0525 967 Gene3D Ribonuclease Inhibitor 117 250 IPR032675 -
Glsi03g0525 967 MobiDBLite consensus disorder prediction 937 951 - -
Glsi03g0525 967 Gene3D Transferase(Phosphotransferase) domain 1 710 920 - -
Glsi03g0525 967 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 66 717 - -
Glsi03g0525 967 ProSiteProfiles Protein kinase domain profile. 486 903 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi03g0525 967 SUPERFAMILY L domain-like 138 396 - -
Glsi03g0525 967 Pfam Malectin domain 427 615 IPR021720 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g0525 Glsi-ChrGlsi03 9945841 9958243 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi03g0525 60 794 Receptor kinase-like Gene Family AT1G29750 50.780 0.0 817
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Glsi03g0525 Malectin 2.4e-38 CL0202