Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g0516 ATGTGGCATTCCTCTAAGAACGGGCTTTATGAGAATAAGGAGATGTCACTGTATGAGAGTGCATCTGGGTTGAGTTATTGGGATTATATCAGCCAAAATCCCAAATTAATGAGTTCATTTGATAAAGTGATGGTAGCTGATTCCCGAATGCTGAAGTTGGCTCTCAAAGACTGTAACCAAGTTTTTGGGAGTTTGGGTTCCATAGTTGATATAGGAGGTGGAAGTGGAACTGTGGCGAGTTTTATCTGTGAAGAATTTCCTACCTTGAAATGCACAGTATTTGATCTACCACATGTTGTAGCTAGCTTGTCAGATAGCCAAAATGTGCGTTTTTTTGGGGGAGATATGTTTCAATTAATACCTTCTGCTGATGTTGTTCTAGTGAAGGTACGTGCATCAATCACTTTGATTGTCCATGATTTCAAATCTATGAATAATATTCTAAATCCTGAACAGAGTTTTATGTTGTAG 471 0.3822 MWHSSKNGLYENKEMSLYESASGLSYWDYISQNPKLMSSFDKVMVADSRMLKLALKDCNQVFGSLGSIVDIGGGSGTVASFICEEFPTLKCTVFDLPHVVASLSDSQNVRFFGGDMFQLIPSADVVLVKVRASITLIVHDFKSMNNILNPEQSFML 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g0516 156 Gene3D Vaccinia Virus protein VP39 1 148 IPR029063 -
Glsi03g0516 156 Pfam O-methyltransferase domain 2 130 IPR001077 GO:0008171
Glsi03g0516 156 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 1 156 IPR016461 GO:0008168
Glsi03g0516 156 PANTHER O-METHYLTRANSFERASE 18 142 IPR016461 GO:0008168
Glsi03g0516 156 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 2 128 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g0516 Glsi-ChrGlsi03 9630560 9631030 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi03g0516 18 141 Monolignol Biosynthesis Gene Families AT5G54160 30.645 8.05e-16 71.2