Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g0509 ATGCCTTCTCCTGGTTGTGTTTACAACATTGGTCCCCGTCATGTCCCATATCGAGGCGAGATCCAGCGGATGCTTGCCAGAGACCTTATTAGCGTCGACTTTCATGTTCGTCATCGGTACGTCTCACCTCACACTGGACAATTCATGGGAACACCTCAAACATTTACATATTCTTCCACTTTACCCACCCAAGTATTCCTCCGAGACTGGCCAAGACTTGCTCCAATACAATTACTTCCCATCCTTTCCCATCACTACCTCTTCTCATTGATACCTCACATCATGTCTTGTGCGACATCGATGCTCCGAAATCGTCCTGTTGGTCCTCGTCAACCTCGCTTGTTTCCTTTGCTTGTGGATATTCTGGTACTTCATGCTCGCCACCGAGAAGAACATCCAGACATAACCGACTTGGCCATTCAGCAATCCATGCAAGAAGTTCGAATGATTCCGGCTTCGGACGATGCTGTTGCTTCGCTCGAGAGAGTGAAAGTTGTGAATGACGGATCAGCAGAAGCCAGAGAATGCAGTATATGTATGGAACCCTTTGAAGATGACGAGGATGCTTCAGCGATGCCGTGCCACCATGTCTATCACAATCAATGTATCGTGCGGTGGCTTAAAACAAATACTGTGTATTTATGTACTGCCACTATGGATTTTGGGGTGGAATCTGTTGATTTTGACTTTGGTTTCCACTTTGATTACCTCAACTCAGTTGCAATAGCTTCCTAG 735 0.4639 MPSPGCVYNIGPRHVPYRGEIQRMLARDLISVDFHVRHRYVSPHTGQFMGTPQTFTYSSTLPTQVFLRDWPRLAPIQLLPILSHHYLFSLIPHIMSCATSMLRNRPVGPRQPRLFPLLVDILVLHARHREEHPDITDLAIQQSMQEVRMIPASDDAVASLERVKVVNDGSAEARECSICMEPFEDDEDASAMPCHHVYHNQCIVRWLKTNTVYLCTATMDFGVESVDFDFGFHFDYLNSVAIAS 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g0509 244 Pfam Ring finger domain 175 215 IPR001841 -
Glsi03g0509 244 ProSiteProfiles Zinc finger RING-type profile. 176 215 IPR001841 -
Glsi03g0509 244 SUPERFAMILY RING/U-box 175 212 - -
Glsi03g0509 244 SMART ring_2 176 215 IPR001841 -
Glsi03g0509 244 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 138 219 IPR013083 -
Glsi03g0509 244 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 127 215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g0509 Glsi-ChrGlsi03 9468064 9469912 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi03g0509 151 238 C3H Transcription Factor Family AT1G68180 32.584 4.07e-12 62.4