Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g0471 ATGTGGGAAAGAAGAAGGGAAAATCCAGGGCCTGAGAACTCTGTTCCTGTCCATTTTGTTTCCTCCCATCCCCAGCTTGCAGCAATGGCCTTCCCAAACCAACCCATGTCAGTTTCTCCTCAGAGAAAGATGGGAAGGGGAAAGATTGAGATCAAAAGGATTGAGAACACCACAAATCGCCAAGTGACCTTCTGTAAGCGCAGAAATGGCCTACTAAAGAAGGCATATGAACTATCTGTGCTTTGTGATGCTGAGGTTGCTCTAATCGTCTTCTCTACCCGTGGCCGCCTCTATGAATATGCTAATAACAGTGTCAAAGCAACAATTGAGAGGTACAAGAAAGCATGTTCAGATTCATCTGGGAGTACATCTGCTTCTGAAGCTAATGCTCAGTTTTACCAGCAAGAAGCAGCCAAACTGCGTGCTCAAATCAGTAACCTGCGGAATAACAACAGGCAAATGATGGGTGAGACTTTGGGCAGTATGAATGCCAAGGAACTCAAGAACTTGGAGGCTAAGTTAGAAAAAGGGATTAGCAGAATTCGTTCCAAAAAGAATGAGCTGATATTTGCAGAAATTGAGTATATGCAGAAGAGGGAAGTAGACTTGCACAATAACAACCAGCTTCTTCGAGCTAAGATAGCTGAAGTTGAGAGGAGCCAGCAGCATAACATGAACATGATGCATGGAGGAACGAACTATGAATCTCTGCAATCTGAGCAGCAATTTGAGTCTCGAGGCTTCTTCCAAGTGACTGGATTACAACCCAGTAATCAGTATGCACCGCAAGACCAGATGGCCCTTCAGTTAGTGTAA 816 0.4449 MWERRRENPGPENSVPVHFVSSHPQLAAMAFPNQPMSVSPQRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYANNSVKATIERYKKACSDSSGSTSASEANAQFYQQEAAKLRAQISNLRNNNRQMMGETLGSMNAKELKNLEAKLEKGISRIRSKKNELIFAEIEYMQKREVDLHNNNQLLRAKIAEVERSQQHNMNMMHGGTNYESLQSEQQFESRGFFQVTGLQPSNQYAPQDQMALQLV 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g0471 271 ProSiteProfiles K-box domain profile. 130 220 IPR002487 GO:0003700|GO:0005634|GO:0006355
Glsi03g0471 271 ProSiteProfiles MADS-box domain profile. 44 104 IPR002100 GO:0003677|GO:0046983
Glsi03g0471 271 PANTHER SERUM RESPONSE FACTOR HOMOLOG 44 226 - -
Glsi03g0471 271 Pfam K-box region 127 214 IPR002487 GO:0003700|GO:0005634|GO:0006355
Glsi03g0471 271 CDD MADS_MEF2_like 45 114 IPR033896 GO:0000977|GO:0045944
Glsi03g0471 271 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 53 100 IPR002100 GO:0003677|GO:0046983
Glsi03g0471 271 SMART madsneu2 44 103 IPR002100 GO:0003677|GO:0046983
Glsi03g0471 271 Coils Coil 167 187 - -
Glsi03g0471 271 PRINTS MADS domain signature 81 102 IPR002100 GO:0003677|GO:0046983
Glsi03g0471 271 PRINTS MADS domain signature 66 81 IPR002100 GO:0003677|GO:0046983
Glsi03g0471 271 PRINTS MADS domain signature 46 66 IPR002100 GO:0003677|GO:0046983
Glsi03g0471 271 FunFam agamous-like MADS-box protein AGL11 56 139 - -
Glsi03g0471 271 Coils Coil 130 157 - -
Glsi03g0471 271 Gene3D - 56 153 IPR036879 GO:0003677|GO:0046983
Glsi03g0471 271 SUPERFAMILY SRF-like 45 116 IPR036879 GO:0003677|GO:0046983
Glsi03g0471 271 ProSitePatterns MADS-box domain signature. 46 100 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g0471 Glsi-ChrGlsi03 8612570 8622592 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi03g0471 42 271 MADS-box Gene Family AT3G58780 66.809 9.71e-108 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Glsi03g0471 K-box 1.8e-27 No_clan