Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g0463 ATGGGAATTCAGGGTCTTTTGCCCCTATTGAAATCGATCATGGTACCATTCCACATTAAACAGTTGGACGGTTGCTATGTAGCGGTAGACACATATTCTTGGCTCCACAAAGGTGCCTTATGTTGCAGTAAAGAGCTTTGCAAGGGAATACCCACATCCAGGCACATTGAGTATTGCATGCGTAGAGTAAATTTGCTGCGGCACTTTGGTGTTAAGCCTATTCTTGTATTTGATGGAGGTCTCCTACCAATGAAGAGTGAACAAGAGAACAAGCGTGCAAGGGTGAGAAAGGAAAATTTTGCACGTGCAGTTGAACATGAGTCAGATGGAAATTCCGCTGCCGCTTTTGAGTGCTACCAGAAAGCTGTTGATATCTCTCCTCTGGTTGCATGTGAACTAATTCAGGTGTTGAAGCAGGAGAATGTACATTATATTGTTGCTCCTTATGAGGCAGATGCCCAGATGACATTCTTGGCAACCAGCAAACAGGTTGAAGCAGTTATAACTGAAGACTCCGATCTAATACCATTTGGTTGCCCAAGAATTATCTTTAAAATGGATAAACTTGGTCAAGCTGTTGAGTATCGGTATTCCATGCTACAAAAGAACAAGGAGCTTAGTTTTGAAGGGTTTAACAGACAAATGCTTCTTGAAATGTGTATATTGAGTGGTTGTGACTATCTGCAGTCCTTGCCAGGAATGGGCCCCAAAAGGGCTCATGCAATTATTAAAAGATTAAAAAGTTATGACAAGGTTCTTAAGCACTTGAGATTCAGCGGTGTCTCTGTCCCTCCATTTTATGAAGATTCATTCAAGAAGGCTATATTGACTTTCAAATATCAACGGGTCTATGATCCAATTAATGAAGATATTGTCCATTTGTCTGATATATCAGATGATATTGGTGATGACCTAGACTTTTTAGGCCCATATCCTTTATATTATATTAAGGTTCTCCTACATTTTTATACCTGTAAAAACTCTGCTCCATTTTGTTCAATCATTTGA 1008 0.3978 MGIQGLLPLLKSIMVPFHIKQLDGCYVAVDTYSWLHKGALCCSKELCKGIPTSRHIEYCMRRVNLLRHFGVKPILVFDGGLLPMKSEQENKRARVRKENFARAVEHESDGNSAAAFECYQKAVDISPLVACELIQVLKQENVHYIVAPYEADAQMTFLATSKQVEAVITEDSDLIPFGCPRIIFKMDKLGQAVEYRYSMLQKNKELSFEGFNRQMLLEMCILSGCDYLQSLPGMGPKRAHAIIKRLKSYDKVLKHLRFSGVSVPPFYEDSFKKAILTFKYQRVYDPINEDIVHLSDISDDIGDDLDFLGPYPLYYIKVLLHFYTCKNSAPFCSII 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g0463 335 CDD H3TH_EXO1 214 285 IPR037315 GO:0003677|GO:0035312
Glsi03g0463 335 SMART xpgineu 138 208 IPR006086 GO:0004518
Glsi03g0463 335 Gene3D - 209 281 - -
Glsi03g0463 335 CDD PIN_EXO1 1 202 IPR044752 GO:0046872
Glsi03g0463 335 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 73 92 IPR006084 -
Glsi03g0463 335 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 158 178 IPR006084 -
Glsi03g0463 335 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 216 231 IPR006084 -
Glsi03g0463 335 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 137 154 IPR006084 -
Glsi03g0463 335 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 24 38 IPR006084 -
Glsi03g0463 335 Pfam XPG N-terminal domain 1 98 IPR006085 GO:0004518
Glsi03g0463 335 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 211 313 IPR036279 -
Glsi03g0463 335 Pfam XPG I-region 141 226 IPR006086 GO:0004518
Glsi03g0463 335 FunFam Exonuclease 1, putative 1 207 - -
Glsi03g0463 335 Gene3D - 1 207 - -
Glsi03g0463 335 FunFam exonuclease 1 209 281 - -
Glsi03g0463 335 SMART xpgn3 1 99 IPR006085 GO:0004518
Glsi03g0463 335 ProSitePatterns XPG protein signature 1. 71 85 IPR019974 GO:0016788
Glsi03g0463 335 SMART HhH_4 213 246 IPR008918 GO:0003677|GO:0003824
Glsi03g0463 335 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 300 IPR006084 -
Glsi03g0463 335 SUPERFAMILY PIN domain-like 2 226 IPR029060 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g0463 Glsi-ChrGlsi03 8178832 8183654 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi03g0463 1 268 Core DNA Replication Machinery Family AT5G26680 25.352 1.09e-17 81.6