Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g0462 ATGGGTTTGCAGTTTTCTTCATATGAGATAAGGAGCAGCATTTACATTCCGGAGCTGGATGCGCTTGTAGACAATCATAAGTGTAGACATACAGTTAGCTTTGTTGCGACAATGCCTCTAAAGGGGAACTATGGGCTTGATTATGATGACGGCTATGATTACTACGAAGACTATGATTATGATTTTGACTCAGAAGAAAATGAAGGACCTGATACAAAGCAAGAGGCTCCTGGTCTTTGGCGATGCTCCATTTGCACTTATGACAATGATGAAAGTCTGACTGCATGTGATATTTGTGGTGTTGTACGTTGTCCTTTGGTCAACACAGGAGCTTCCGACAATAACAAAACAGTTAAAGGCATATGCAAAAATTCTGGAGCATCCAAATTGGCTGAGTCTCTTTTTGCATTATTGCCGCAACAGATGCCCAAAGAAGGTGTGTTATTTCTAAAGCAGGGTGATGGTTTTCTGACAGAAGATGGCAGTAGCTTCTACGAGCTTGGGAATGCCCAAGGAGAATTTCTTGAATTACATAAGTCTCTTAATACTCAAAGCCATCACCATCTAAACATAGCCCCCTTCAAGTTTGATGTTCCATCCCCAGATGATGTGGTTTCCAAGGGACTGCAATCTTCCAAAAAGGGTTCGAAAGGCGCTGTTACTAACTCTAAAGGTTCTCGCATTTCCTCAAGCATAATACAGAATGTACAATCAAATGCTGAAAGTTCAGACAACTCATTGCAGAAGGGCAGGCAGGATAGTTTGGCTGAAAGCAAGTTTTCCAAGGCTGTAGCTGTTGATCTGGAAACAAGTGATAAGACTTCAGACAACTTACCAGCGTCCTTGCGAAAGGGCAAAGGTAAGAAAGTGAATAAATCCAAAGATGGTACAATTGATATTCAATCAAGTGAAGAAATATTGGGTAGTTCATCTGCACAGCTAAAAGTCAGAGATAGTGGTGATGAAATCAATTGCACTTCGAGCAAGGACGTCAAACTTCAAAATAGTTTCAATACAGCTGTCAATGTAAGATCTGGAAAGTCGGATAATACTAATGCTAAAGGACCTCGCCCGCAAGTGCCTTATAAACCAGAAAAATGGATGCTCCCTCAGCAAGCAGAAGATACACTGACTCAGCTGAATCTTGCAGTGGTTGGCCATGTTGATTCTGGGAAGTCAACACTGTCAGGCAGACTGCTACACCTGTTGGGACGAATTACCCAGAAAGAAATGCACAAATATGAAAAGGAGGCCAAATTACAGGGTAAGGGATCCTTTGCTTATGCTTGGGCACTGGATGAAAGTTCTGAAGAAAGGGAAAGGGGAATAACTATGACGGTGGCTGTTGCTTATTTTGACACTAAGAGATATCATGTTGTCGTGCTTGACTCCCCGGGCCATAAAGATTTTGTACCAAACTTGATTTCTGGGGCAACACAAGCTGATGCTGCAATTCTTGTTATAGATGCCTCGCTTGGTTCATTTGAAGCAGGTATGGATGGTAGCAAAGGACAAACAAGGGAGCATGCTCAGCTGATCAGAAGTTTCGGTGTTGACCAGGTTATAGTTGCAGTAAATAAGATGGATACTGTGGCATACTCCAAAGATCGATTTGATTTAATTAGACAGCAATTGGGAGTGTTTCTCCGCTCATGTGGTTTTAAAGATTCATCTGTGTCATGGATTCCTTTAAGCGTCATAGAAAATCAAAATTTGGGGGCATGTCCTTCTGATGTTCGTTTCAAATCCTGGTATAATGGGCCTCATCTTTTAGATGCGATTGATTCTCTCCAACCCCCTACTAGAGAATTCTCAAAGCCTCTCCTAATGCCAATATGTGATGTCATCAAGTCACCTGCACTTGGGCAGGTGTCTGCTTGTGGTAAATTGGAAGCTGGAGCTCTTCGAAGTGGATCAAAGGTCTTAGTGATGCCTTCTGCTGTTGTGGGGGCTGTACGCTCATTGAAGCGTGACACTAATGCCTGCACTATTGCAAGAGCTGGCGATAATGTAGCTGTCACGTTGGATGGGGTAGATGTAAGTCATGTAATGGCAGGAGGGGTACTATGCCATCCTGATTTTCCGGTTGTGGTGGCAAAACATTTGGAGTTGAAGGTGCTTGTTTTGGAGGGTGCAAATCCCATATTGGTGGGCTCTCAGTTAGAGTTTCATATACACCATGCAAAGGAGCCTGCTAAAGTTTCAAGACTATTGTCAGTACTTGATCCAAAGACTGGTAAGGTGACAAAGAAGTCCCCTCGTTGTCTCAATGCAAAGCAGAGTGCAGTAATAGAGGTGATTTTGCAGGAGCCAGTCTGTGTTCTAGAATCCTCTAGTTGTAAAGCCCTTGGAAGGGTGTCTCTAAGATCATTAGGAAGAACAATTGCTGTTGGACTTGTGACACGAATAATCGAAGAGCAAGAGTAG 2427 0.4289 MGLQFSSYEIRSSIYIPELDALVDNHKCRHTVSFVATMPLKGNYGLDYDDGYDYYEDYDYDFDSEENEGPDTKQEAPGLWRCSICTYDNDESLTACDICGVVRCPLVNTGASDNNKTVKGICKNSGASKLAESLFALLPQQMPKEGVLFLKQGDGFLTEDGSSFYELGNAQGEFLELHKSLNTQSHHHLNIAPFKFDVPSPDDVVSKGLQSSKKGSKGAVTNSKGSRISSSIIQNVQSNAESSDNSLQKGRQDSLAESKFSKAVAVDLETSDKTSDNLPASLRKGKGKKVNKSKDGTIDIQSSEEILGSSSAQLKVRDSGDEINCTSSKDVKLQNSFNTAVNVRSGKSDNTNAKGPRPQVPYKPEKWMLPQQAEDTLTQLNLAVVGHVDSGKSTLSGRLLHLLGRITQKEMHKYEKEAKLQGKGSFAYAWALDESSEERERGITMTVAVAYFDTKRYHVVVLDSPGHKDFVPNLISGATQADAAILVIDASLGSFEAGMDGSKGQTREHAQLIRSFGVDQVIVAVNKMDTVAYSKDRFDLIRQQLGVFLRSCGFKDSSVSWIPLSVIENQNLGACPSDVRFKSWYNGPHLLDAIDSLQPPTREFSKPLLMPICDVIKSPALGQVSACGKLEAGALRSGSKVLVMPSAVVGAVRSLKRDTNACTIARAGDNVAVTLDGVDVSHVMAGGVLCHPDFPVVVAKHLELKVLVLEGANPILVGSQLEFHIHHAKEPAKVSRLLSVLDPKTGKVTKKSPRCLNAKQSAVIEVILQEPVCVLESSSCKALGRVSLRSLGRTIAVGLVTRIIEEQE 808
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g0462 808 PANTHER TRANSLATION FACTOR 376 803 - -
Glsi03g0462 808 FunFam Translation elongation factor EF-1 604 694 - -
Glsi03g0462 808 CDD HBS1_C_III 695 803 - -
Glsi03g0462 808 PRINTS GTP-binding elongation factor signature 381 394 IPR000795 GO:0003924|GO:0005525
Glsi03g0462 808 PRINTS GTP-binding elongation factor signature 476 487 IPR000795 GO:0003924|GO:0005525
Glsi03g0462 808 PRINTS GTP-binding elongation factor signature 440 448 IPR000795 GO:0003924|GO:0005525
Glsi03g0462 808 PRINTS GTP-binding elongation factor signature 521 530 IPR000795 GO:0003924|GO:0005525
Glsi03g0462 808 PRINTS GTP-binding elongation factor signature 460 470 IPR000795 GO:0003924|GO:0005525
Glsi03g0462 808 ProSiteProfiles Zinc finger RanBP2 type profile. 76 105 IPR001876 -
Glsi03g0462 808 MobiDBLite consensus disorder prediction 203 225 - -
Glsi03g0462 808 Gene3D - 368 601 IPR027417 -
Glsi03g0462 808 FunFam elongation factor 1-alpha isoform X4 698 807 - -
Glsi03g0462 808 CDD EF1_alpha 381 600 - -
Glsi03g0462 808 FunFam Elongation factor 1 alpha-like protein 370 601 - -
Glsi03g0462 808 ProSitePatterns Zinc finger RanBP2-type signature. 80 99 IPR001876 -
Glsi03g0462 808 Gene3D Translation factors 698 808 - -
Glsi03g0462 808 MobiDBLite consensus disorder prediction 343 363 - -
Glsi03g0462 808 Pfam Elongation factor Tu C-terminal domain 696 803 IPR004160 -
Glsi03g0462 808 Gene3D Translation factors 605 694 - -
Glsi03g0462 808 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 377 608 IPR000795 GO:0003924|GO:0005525
Glsi03g0462 808 MobiDBLite consensus disorder prediction 268 297 - -
Glsi03g0462 808 SUPERFAMILY Translation proteins 602 695 IPR009000 -
Glsi03g0462 808 SMART zf_4 78 102 IPR001876 -
Glsi03g0462 808 MobiDBLite consensus disorder prediction 205 225 - -
Glsi03g0462 808 Pfam Elongation factor Tu GTP binding domain 380 597 IPR000795 GO:0003924|GO:0005525
Glsi03g0462 808 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 379 622 IPR027417 -
Glsi03g0462 808 SUPERFAMILY Ran binding protein zinc finger-like 77 103 IPR036443 -
Glsi03g0462 808 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 700 804 IPR009001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g0462 Glsi-ChrGlsi03 8151269 8165705 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi03g0462 190 806 Eukaryotic Initiation Factors Gene Family AT5G10630 61.066 0.0 746