Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g0425 ATGAGCACCAGAGGCAGAGAGGAGAAAGATACATCATCGTCCTCGACATCAGCTTCAGCAAGAAGTATGAAGAATAGTGCCGGTACTGCTATTAGAGACAAAGCACTTGCTCAGTACAGTGCTGATGCTGGGATTTTGGCCGAGTTTGAGCAGTCTGGTGTGTCTGGCAAATTATTCGACTACTCGAGGTCGGTGATTTATCCTCCGGAATCTGTGTCGGACGAGAAAATGACGGCTTATTTGTCCAAAATCCAAAGGGGCGGTCTCATTCAGCCCTTTGGCTGTATGCTTGCGATTGAAGAACCCACTTTCAGAATCATCGGATACAGTGAGAATTGCTTTGAATTGTTGGGTTTAGACAAAGAATCTGATTCAAAACAGTTCAAGCGTCTGATTGGAGTTGATGCTATTACTCTGTTTACGCCTTCTTCAGGATCCTCCCTAGCAAAAGCTGCGGCATCGAGCGAAATTTCGCTTCTGAACCCGATTTGGGTTTATTCAAGAACAACCCACAGGCCATTCTATGCTATACTGCATAGGATTGATGTGGGAATTGTAATTGATTTGGAGCCTGCACGGTCGAGTGATCATGCATTGTCTCTTGCTGGGGCAGTGCAGTCCCAGAAGCTAGCTGTTCGGGCAATTTCAAGGCTGCAATCCCTTCCTGGGGGAGATATTGGAGTGTTGTGTGACACGGTCGTTGAAGAAGTTCAGAAGCTAACTGGGTATGACAGGGTTATGGTCTATAAGTTCCACAATGATGATCATGGTGAGGTTATATCTGAAATTAGGAGGTCAGATTTAGAACCCTATTTGGGTTTGCATTACCCTGCCACGGATATCCCTCAAGCTGCTCGCTTCTTGTTCAAGCAAAACCGGGTCAGGATGATTTGTGATTGCCATGCAAATCCAGTTAAGGTCATTCAAAGTGACGAATTAAGGCAACCACTCTGCTTGGTCAATTCAACCCTTCGGTCATCACACGGATGTCACACACAGTACATGGCTAACATGGGCTCAATTGCCTCTTTGGTGCTGGCAGTTATGGTCAATGGAAATGATACAACAAAACTATGGGGTTTGCTAGTTTGTCATCACACTTCACCGCGCTATGTCCCTTTCCCCCTTCGCTATGCTTGTGAGTTCCTCATGCAGGCATTTGGACTGCAGCTTTACATGGAGATGCAATTGGCATCACAAATGGTGGAGAAGAGAACTCTTAGAACGCAAACCTTACTATGTGACATGCTCCTCCGTGATGCTCCATTTGGTATTGTTACTCAATCTCCTAGTATAATGGATCTTGTAAAGTGTGATGGTGCTGCTTTATTGTATGGCGGAAAGTGTTGGCTGCTAGGCACGACCCCAACTGAATCACAGGTGAAAGATATTGCAGAATGGCTACATAGTAATCATGGGGATTCAACAGGTTTGAGCACAGATAGTTTGGCTGATGCCGATTATCCAGGTGCTGCTTTACTGGGTGATGCAGTTTGTGGCATGGCAACAGCAAGAATTAATTCAAGAGATTTCTTGTTCTGGTTCAGGTCTCACACTGCTAAGGAAGTTAAATGGGGAGGAGCCAAGCACCATCCAGAGGATAAAGATGATGGTGGAAAAATGAACCCAAGATCATCATTTAAAGCATTTCTGGAAGTGGTCAAAAGCAGAAGTCTTCCATGGGAGGTGTCAGAAATCAATGCTATTCACTCATTACAGCTTATAATGAGAGATTCATTCCCAGACACGGAGAACTGTGGTCCTAAGACCCTAACTCATGTGCAGCAAGGGGATACTGAAATGGGTGGGATAAATGAACTCAGTTCAGTGGCATTAGAAATGGTTAGATTGATTGAGACAGCAACAGTTCCAATTTTTGGGGTTGACTCAGCTGGTCTGGTAAACGGATGGAATGCTAAAATAGCCGAACTAACTGATTTGCATCCCAGTGAAGCAATGGGAAAATCCCTAGTAGATGAAGTTGTACTTGGAGACTCGCGTGAAATTGTCAAAAATGTTCTAAGAAGAGCCTTGCAAGGTCAGGAGGACAAAAATGTTGAGTTGAAATTGAAACACTTTGGGGTTCATCAGCAAAAGTCGGTTGTATATATTATAGCCAATGCCTGCACAAGTAGGGATTACACAAATGCTGTCGTTGGGGTATGCTTTGTGGGTCAAGATATCACGTATGAGAAATCTGTTCTGGATAAATTTATCAAGTTGGAAGGTGATTACAAAGCTATCATACAGAGTCTCAACCCATTAATTCCACCCATATTTGCTTCTGATGAGAATGCCTGCTGCTCTGAATGGAATGCAGCCATGGAAAGGCTAACTGGTTGGAAGAGAGATGAGGTTATAGGAAAAATGCTTCCTGGGGAGATCTTTGGAGGTTTATGTCAATTAAAAGGTCAAGATACACTGACTAAATTTATGATTTTATTGTACCGAGGAATCAGTGGTCAAGATTCTGAGAAGTTCCCATTTGGAATTTTTAATAGAAAAGGGGAACTTGTAGAGGTTTTGTTAACAGCAAACAAGAGGATGGATGCAGATGGAAATATAATTGGTTGTTTCTGCTTCTTGCAGATTGTGTCACCAGACCTTCATAAGCCCTCAGAAGGACAAAGACCACCGTGCACGGCAAACTTCTCTGAATTTAAAAAATTAGCTTATATATTACAGGAGATGAAGAATCCTTTAAATGGTATACGCTTCACACACAAACTTATGGCAAATACAGCTGTTTCAGAAGATCAGAAACAATTTCTTGACACTAGTGATGCATGTGAAAGACAAATCATGGCAATTATTGAGGATACAGATATAGGGAGTATTGACCAAGGCACTTTGCAGCTAAACATGGAGGAGTTTCTTCTTGGAAATATTTTAGATGCCGTTGTCAGTCAAGTCATGATCTTGATAAAAGATAAAAGCTTAAAGCTCTTTCATGAAATTCCTGATGAAATCAAAACACTTACTCTATTCGGTGATCAAATTAAGCTTCAGGTGGTCTTGTCTGACTTTTTGCTTAATGTGGTCAACCATACACCATCTCCTAATGGCTGGGTAGAAATAAAGATTTCGCCTGGTCTTAAGATAATACAGAATGGCAATGAGTTTATCCATCTGCAGTTCAGACTGACCCATTCTGGTCAAGGTCTTCCTTCTGAGGTACTTCAGGATATGTTTGAAGCAGAGAACCAATGGACTACAGAGGAAGGTCTAGGGCTCTATATGTCCAGAAAAATCCTCAGTAGGATGAATGGTCATGTCCACTATGTAAGAGAACACAATAAGTGCTACTTCCTCATTGATCTTCAACTCAGAACAAGAAAAGACAGACAAAGGATTTTGCAAGCAGAGACGAGCATATTAACTTAA 3384 0.4232 MSTRGREEKDTSSSSTSASARSMKNSAGTAIRDKALAQYSADAGILAEFEQSGVSGKLFDYSRSVIYPPESVSDEKMTAYLSKIQRGGLIQPFGCMLAIEEPTFRIIGYSENCFELLGLDKESDSKQFKRLIGVDAITLFTPSSGSSLAKAAASSEISLLNPIWVYSRTTHRPFYAILHRIDVGIVIDLEPARSSDHALSLAGAVQSQKLAVRAISRLQSLPGGDIGVLCDTVVEEVQKLTGYDRVMVYKFHNDDHGEVISEIRRSDLEPYLGLHYPATDIPQAARFLFKQNRVRMICDCHANPVKVIQSDELRQPLCLVNSTLRSSHGCHTQYMANMGSIASLVLAVMVNGNDTTKLWGLLVCHHTSPRYVPFPLRYACEFLMQAFGLQLYMEMQLASQMVEKRTLRTQTLLCDMLLRDAPFGIVTQSPSIMDLVKCDGAALLYGGKCWLLGTTPTESQVKDIAEWLHSNHGDSTGLSTDSLADADYPGAALLGDAVCGMATARINSRDFLFWFRSHTAKEVKWGGAKHHPEDKDDGGKMNPRSSFKAFLEVVKSRSLPWEVSEINAIHSLQLIMRDSFPDTENCGPKTLTHVQQGDTEMGGINELSSVALEMVRLIETATVPIFGVDSAGLVNGWNAKIAELTDLHPSEAMGKSLVDEVVLGDSREIVKNVLRRALQGQEDKNVELKLKHFGVHQQKSVVYIIANACTSRDYTNAVVGVCFVGQDITYEKSVLDKFIKLEGDYKAIIQSLNPLIPPIFASDENACCSEWNAAMERLTGWKRDEVIGKMLPGEIFGGLCQLKGQDTLTKFMILLYRGISGQDSEKFPFGIFNRKGELVEVLLTANKRMDADGNIIGCFCFLQIVSPDLHKPSEGQRPPCTANFSEFKKLAYILQEMKNPLNGIRFTHKLMANTAVSEDQKQFLDTSDACERQIMAIIEDTDIGSIDQGTLQLNMEEFLLGNILDAVVSQVMILIKDKSLKLFHEIPDEIKTLTLFGDQIKLQVVLSDFLLNVVNHTPSPNGWVEIKISPGLKIIQNGNEFIHLQFRLTHSGQGLPSEVLQDMFEAENQWTTEEGLGLYMSRKILSRMNGHVHYVREHNKCYFLIDLQLRTRKDRQRILQAETSILT 1127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g0425 1127 FunFam Phytochrome 606 738 - -
Glsi03g0425 1127 Gene3D PAS domain 83 328 - -
Glsi03g0425 1127 Pfam GAF domain 225 394 IPR003018 GO:0005515
Glsi03g0425 1127 Gene3D - 928 1103 IPR036890 -
Glsi03g0425 1127 Pfam His Kinase A (phospho-acceptor) domain 890 949 IPR003661 GO:0000155|GO:0007165
Glsi03g0425 1127 SMART gaf_1 225 405 IPR003018 GO:0005515
Glsi03g0425 1127 Gene3D - 400 573 IPR043150 -
Glsi03g0425 1127 Gene3D - 206 556 IPR029016 -
Glsi03g0425 1127 PIRSF Phytochrome_conventional 10 1118 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Glsi03g0425 1127 PANTHER OS08G0260000 PROTEIN 76 946 - -
Glsi03g0425 1127 Pfam PAS fold 613 728 IPR013767 GO:0006355
Glsi03g0425 1127 Pfam PAS fold 744 863 IPR013767 GO:0006355
Glsi03g0425 1127 Pfam PAS fold 79 192 IPR013654 GO:0006355
Glsi03g0425 1127 CDD PAS 621 728 IPR000014 -
Glsi03g0425 1127 CDD HATPase_Phy-like 996 1109 IPR044767 -
Glsi03g0425 1127 SUPERFAMILY PYP-like sensor domain (PAS domain) 84 194 IPR035965 -
Glsi03g0425 1127 Pfam Phytochrome region 408 580 IPR013515 GO:0006355|GO:0009584
Glsi03g0425 1127 FunFam Phytochrome 757 865 - -
Glsi03g0425 1127 SMART HisKA_10 886 949 IPR003661 GO:0000155|GO:0007165
Glsi03g0425 1127 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 225 385 IPR016132 -
Glsi03g0425 1127 SUPERFAMILY GAF domain-like 403 580 - -
Glsi03g0425 1127 CDD HisKA 890 940 IPR003661 GO:0000155|GO:0007165
Glsi03g0425 1127 FunFam Phytochrome 400 530 - -
Glsi03g0425 1127 SUPERFAMILY PYP-like sensor domain (PAS domain) 616 724 IPR035965 -
Glsi03g0425 1127 SMART pas_2 612 679 IPR000014 -
Glsi03g0425 1127 SMART pas_2 743 813 IPR000014 -
Glsi03g0425 1127 Gene3D PAS domain 757 868 - -
Glsi03g0425 1127 SUPERFAMILY PYP-like sensor domain (PAS domain) 758 860 IPR035965 -
Glsi03g0425 1127 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 950 1109 IPR036890 -
Glsi03g0425 1127 CDD PAS 755 863 IPR000014 -
Glsi03g0425 1127 ProSiteProfiles Histidine kinase domain profile. 892 1111 IPR005467 -
Glsi03g0425 1127 MobiDBLite consensus disorder prediction 1 26 - -
Glsi03g0425 1127 PRINTS Phytochrome signature 613 629 IPR001294 GO:0006355|GO:0009584
Glsi03g0425 1127 PRINTS Phytochrome signature 140 162 IPR001294 GO:0006355|GO:0009584
Glsi03g0425 1127 PRINTS Phytochrome signature 632 647 IPR001294 GO:0006355|GO:0009584
Glsi03g0425 1127 PRINTS Phytochrome signature 706 723 IPR001294 GO:0006355|GO:0009584
Glsi03g0425 1127 PRINTS Phytochrome signature 726 746 IPR001294 GO:0006355|GO:0009584
Glsi03g0425 1127 PRINTS Phytochrome signature 510 529 IPR001294 GO:0006355|GO:0009584
Glsi03g0425 1127 PRINTS Phytochrome signature 325 346 IPR001294 GO:0006355|GO:0009584
Glsi03g0425 1127 PRINTS Phytochrome signature 543 561 IPR001294 GO:0006355|GO:0009584
Glsi03g0425 1127 PRINTS Phytochrome signature 240 259 IPR001294 GO:0006355|GO:0009584
Glsi03g0425 1127 PRINTS Phytochrome signature 425 445 IPR001294 GO:0006355|GO:0009584
Glsi03g0425 1127 SUPERFAMILY GAF domain-like 205 391 - -
Glsi03g0425 1127 Gene3D PAS domain 611 733 - -
Glsi03g0425 1127 Coils Coil 671 691 - -
Glsi03g0425 1127 SMART HKATPase_4 997 1111 IPR003594 -
Glsi03g0425 1127 MobiDBLite consensus disorder prediction 12 26 - -
Glsi03g0425 1127 NCBIfam PAS domain S-box protein 617 732 IPR000014 -
Glsi03g0425 1127 ProSiteProfiles PAS repeat profile. 610 681 IPR000014 -
Glsi03g0425 1127 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 997 1109 IPR003594 -
Glsi03g0425 1127 ProSiteProfiles PAS repeat profile. 744 796 IPR000014 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g0425 Glsi-ChrGlsi03 7241137 7246120 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi03g0425 15 1111 Histidine Kinase Gene Family AT4G18130 64.170 0.0 1487