Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g0424 ATGATCATTGGGAAGAGGTTTTTATCGAATCAGTTTGATACCATTTGGTTTACGGTGCGCACGTACCAAGCTGTTTCGTCTCAGGATACTCTTCCTTCTCTTCGCGCTCTAGTGCTGGCTGAATTTTTTTGCAGGAAGCAGAAGGTTGATGCAATGAAGCAGTCTTTTGATCGTTCCCCTTCAGTACGTCCTGCTAAGATTCCATCTATTAATATATCTAAAGAAGTAGGGCGAGACGCATGGGAGGTTTTATCTGGATCTGATTTCTACTGTGCCTCATCTGATTCTAGCCTTTTTTCTAGCTCATTACCTGTTCTGCCACACAAAAAGTTGAACTTGAATGTATCTGAAAATAGTTGTCAATTTGTCAATGGCATCTCATCTAATGATTCACTTGAAGATGTTGATACTCATAGAATTGGAACCATGCTTCCTGATGATGAGGAGCTTTTAGCCAGCATAATGGATGATTTTGACTTAAGTGGGTTGCCGAGTTCCCTGGAGGACTTGGAAGATTATGATCTTTTTGGTAGCGGTGGAGGTATGGAACTGGAAACTGATCCACAAGAAAGTCTCAGCATAGGAATCTCAAAATTAAGTTTCTCTGATAGCACTTCTGTTAATGGTTTGCCCCATTATTCTATTCCTAATGCGGTGGGAACTGTTGCTGGAGAACATCCATACGGGGAGCATCCTTCTCGAACTTTATTTGTTCGAAATATTAATAGCAATGTGGAGGATAACGAACTGAGAGCCCTCTTTGAGCAATATGGTGATATTAGAACCCTATATACTGCATGTAAACATCGGGGGTTTGTAATGATATCCTATTATGACATCCGTGCTGCTCGAACAGCTATGCGTGCATTACAAAACAAACCATTGCGGCGCAGGAGACTTGACATTCACTTCTCAATACCAAAGGATAATCCATCAGACAAGGATATCAATCAAGGAACCTTAGTGGCTTTTAATTTGGATCCATCTGTTTCAAATGAAGACCTTCGACAAATATTTGGGGCTTATGGCGAGGTCAAAGAGATAAGGGAAACACCTCACAAGAGACATCATAAGTTTATCGAATTTTTTGATGCCAGAGCTGCAGAAGCAGCACTTAAATCATTAAACAGGAGTGACATAGCTGGTAAACGCATAAAGTTGGAACCTAGTCGCCCTGGTGGAGCTCGGCGAAAGTCAGACATTAGAGGAAGGTTTAACAGAAGATCACCTGATGAAACTTGCTTAAGAGATTTTGAATATTTGATGCTCCAACTAAATCAAGATCTTGAGCTAGATGAATCCCAGAGTTTTCGACATCAAGTGAGCTCACCCGTAACCAACTCTCCACCAGGTGACTGGTTGCAGTTTAACAGCCCCGTTGAACATAATCTAATAAAAACTATCATTAAATCTCCTGCGTCTAGGATCCTGAGCCCAACGATAGGCAACCGTTCACCAGGGTTAGCTTCAATTTTGCAACCTCAGGTATCAAACACTCTGAAGGGTGCAACTGTTTGCCAGGACTTAGGGAGTAATCATGAAGAGCACATATTTACTAGTACCAATTCATCACATGGAGCTATATATCATTCTAATTCACTTCCTGCACCAACGTTCAGCCAATATCATGGAACTTTGTCCTCTTTCAGTCCACCGACTTCAAATGGATCCTCTATGGAAACCTTGTCTGGACCACAGTTTCTTTGGGGAAGTTCAAGCCTATACTCAGAGCACACCAAACCTTCAGCTAGGCCAAGACTGCCTGTACGGCATCCATATACGTCAAGTGGAAAGGGTCATGCCTTCCCATTCTCAGGTCAGAATAGTTCCTTTGCTGGTGAATCCCAACATCATCACCACCATCATGTTGCCTCTGCTCCATTGGGCATTCCTTTCAAGAGGCACTTTGGTTTTCTGCCTGAGTCACCTGATACCTCATTCATGAATCATGTTGGTTATGGAGGCATAGGTTCTGGACATAATGATGGAAACTTCATGGCTAATGCGGGTGGGTCTGTCAATGCTGGCATTACTATACCAAGAAATATTACTGGAAATGGTTCATCAAACTTCAGAATGAGATCCTCTCCTAGGCTTAGCCCTGTGTTTTTGAGTAAAGGTCCTTATCCAGGACTGCCACGAACTACTGTGGAGGGTTTGACTGACCGTGGGAGGAGTAGACGGGTAGACAACAATGGTAGTCAAGTAGATAACAAAAAGCAATTTCAGCTCGACTTGGATAAGATTAAAAGTGGGGAAGATACGAGGACTACTTTAATGATAAAGAATATCCCAAATAAATATACGTCAAAAATGTTGCTAGCTTCCATTGATGAAAATCATGGTGGTACCTATGATTTTCTCTATCTGCCAATTGATTTTAAGAATAAATGCAATGTGGGCTATGCATTTATCAACATACTTTCACCCTCGCTAATTATTCCATTCTATGAGACATTCAATGGGAAGAAATGGGAGAAATTTAATAGTGAAAAAGTTGCTTCTTTGGCCTATGCTCGAATTCAAGGGAAGGCTTCCCTTGTGAGCCACTTCCAAAATTCAAGTTTGATGAATGACTATAACCGCTGTCGTCCTATTCTCTTCCACTCAGAGGGTCCTGAACCAGGTGATCAGATCACACACGAATGTCTACCCTCCGACAATCTGAATGCCCTTAGACCAAGTGAGTCTGATTCAAGTAATTCTTCTGGAAGCCCTTCGAAGTATAGCTGTCCTATGAACTTGAAGACAAGTTAA 2757 0.4186 MIIGKRFLSNQFDTIWFTVRTYQAVSSQDTLPSLRALVLAEFFCRKQKVDAMKQSFDRSPSVRPAKIPSINISKEVGRDAWEVLSGSDFYCASSDSSLFSSSLPVLPHKKLNLNVSENSCQFVNGISSNDSLEDVDTHRIGTMLPDDEELLASIMDDFDLSGLPSSLEDLEDYDLFGSGGGMELETDPQESLSIGISKLSFSDSTSVNGLPHYSIPNAVGTVAGEHPYGEHPSRTLFVRNINSNVEDNELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRRLDIHFSIPKDNPSDKDINQGTLVAFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFFDARAAEAALKSLNRSDIAGKRIKLEPSRPGGARRKSDIRGRFNRRSPDETCLRDFEYLMLQLNQDLELDESQSFRHQVSSPVTNSPPGDWLQFNSPVEHNLIKTIIKSPASRILSPTIGNRSPGLASILQPQVSNTLKGATVCQDLGSNHEEHIFTSTNSSHGAIYHSNSLPAPTFSQYHGTLSSFSPPTSNGSSMETLSGPQFLWGSSSLYSEHTKPSARPRLPVRHPYTSSGKGHAFPFSGQNSSFAGESQHHHHHHVASAPLGIPFKRHFGFLPESPDTSFMNHVGYGGIGSGHNDGNFMANAGGSVNAGITIPRNITGNGSSNFRMRSSPRLSPVFLSKGPYPGLPRTTVEGLTDRGRSRRVDNNGSQVDNKKQFQLDLDKIKSGEDTRTTLMIKNIPNKYTSKMLLASIDENHGGTYDFLYLPIDFKNKCNVGYAFINILSPSLIIPFYETFNGKKWEKFNSEKVASLAYARIQGKASLVSHFQNSSLMNDYNRCRPILFHSEGPEPGDQITHECLPSDNLNALRPSESDSSNSSGSPSKYSCPMNLKTS 918
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g0424 918 FunFam Protein MEI2-like 1 318 410 - -
Glsi03g0424 918 CDD RRM3_MEI2_like 759 844 IPR034454 -
Glsi03g0424 918 PANTHER RNA RECOGNITION MOTIF-CONTAINING 86 894 - -
Glsi03g0424 918 Pfam RNA recognition motif 2 756 852 IPR007201 -
Glsi03g0424 918 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 234 307 IPR000504 GO:0003723
Glsi03g0424 918 FunFam MEI2-like protein 5 isoform 2 223 317 - -
Glsi03g0424 918 Gene3D - 319 402 IPR012677 -
Glsi03g0424 918 SMART rrm1_1 320 388 IPR000504 GO:0003723
Glsi03g0424 918 SMART rrm1_1 235 303 IPR000504 GO:0003723
Glsi03g0424 918 Gene3D - 222 318 IPR012677 -
Glsi03g0424 918 CDD RRM2_MEI2_like 318 388 - -
Glsi03g0424 918 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 325 386 IPR000504 GO:0003723
Glsi03g0424 918 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 236 300 IPR000504 GO:0003723
Glsi03g0424 918 SUPERFAMILY RNA-binding domain, RBD 231 394 IPR035979 GO:0003676
Glsi03g0424 918 MobiDBLite consensus disorder prediction 594 623 - -
Glsi03g0424 918 MobiDBLite consensus disorder prediction 890 918 - -
Glsi03g0424 918 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 319 392 IPR000504 GO:0003723
Glsi03g0424 918 MobiDBLite consensus disorder prediction 887 918 - -
Glsi03g0424 918 CDD RRM1_MEI2_like 233 309 IPR034453 -
Glsi03g0424 918 SUPERFAMILY RNA-binding domain, RBD 758 843 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g0424 Glsi-ChrGlsi03 7228288 7239404 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi03g0424 229 400 Eukaryotic Initiation Factors Gene Family AT1G71770 25.510 1.63e-06 50.1