LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi03g0394	ATGGGTCGTGGAAGATTAGCCACGAAGTTCATTGAGAACGAGAAAGCACGCAAGGCAACATTTCAAAAGAGAAAGAATGGACTAGTAAAGAAAGTTCATGAACTTTCCACACTCTGTGGAGTTGATTCTTGCTTGATCATCTACAGCCCCAAGTTCAACGATCAACTAAATCATACTAATCAACCAGAGACTTGGCCTCAAGATCCAAGACAGGTAAATCGCGTTATAAAAAAGTATGAGGCCAAGATTTCCCAGAAACCTGCCAGGAACTACGATGTCTACGACTTCTTCAAGGACAGGAGGAACAAGGTTGAAGCTGAGACTTCCAAACTGAACAAAGAGAGATTCAGGATGCTGTACCCGACCTGGAACAACAATTTCAATAGTCTAGGAGAGGATCAGCTCAGGATGTTTGTTAGTATCTTGGATGCTAAACTTGAGGATTGTAAGCACAGAATCAATGTGCTGAGAAAGAGGCGTTATTTGAAGGAAAAAGCAGCAGAATCCGAGGTAGCAGCCATTAATAATTCCTGCAATGCTTCAAACCGAAGCCACCTCAATTTCATGAAGAACAAGTCTCAAACCCAGATTTTTTCTGCTCCTGCGAAGAAGCTAAGTGATAATAATAACCAGCTAGCATGCCCACTTCATCAGTTTGACAAGAGCTCTCAAATTCAGATGCTTCACTTTGATCCGAATCTTAATGAGATGGTGGTTTGGAATGGTCAAGTTGGTACTGAAAAGAATGGTGCTTTAAGTTATTATGATCCAATGCTGGAAAAGGATGGAGCCAGAAATAACCCAGATTCTTCACTGTGCTATTACAGTGGAGGTTTGAAATCAGCGCAACCATGTAACTACTATCCTTATTTGCAGAAATTTCCTTCTCAGAATATGCAGTACCATGAAGCAACTCTGCAAGCTCAGACGAATGGCTACCAAGATCTGCTTCAAGCTCAGATTTTCCACTACATGAACACGAAGAAGTAG	990	0.4152	MGRGRLATKFIENEKARKATFQKRKNGLVKKVHELSTLCGVDSCLIIYSPKFNDQLNHTNQPETWPQDPRQVNRVIKKYEAKISQKPARNYDVYDFFKDRRNKVEAETSKLNKERFRMLYPTWNNNFNSLGEDQLRMFVSILDAKLEDCKHRINVLRKRRYLKEKAAESEVAAINNSCNASNRSHLNFMKNKSQTQIFSAPAKKLSDNNNQLACPLHQFDKSSQIQMLHFDPNLNEMVVWNGQVGTEKNGALSYYDPMLEKDGARNNPDSSLCYYSGGLKSAQPCNYYPYLQKFPSQNMQYHEATLQAQTNGYQDLLQAQIFHYMNTKK	329

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi03g0394	329	ProSiteProfiles	MADS-box domain profile.	1	51	IPR002100	GO:0003677\|GO:0046983
	Glsi03g0394	329	PANTHER	SERUM RESPONSE FACTOR HOMOLOG	3	195	-	-
	Glsi03g0394	329	SUPERFAMILY	SRF-like	2	87	IPR036879	GO:0003677\|GO:0046983
	Glsi03g0394	329	SMART	madsneu2	1	62	IPR002100	GO:0003677\|GO:0046983
	Glsi03g0394	329	Coils	Coil	94	114	-	-
	Glsi03g0394	329	PRINTS	MADS domain signature	23	38	IPR002100	GO:0003677\|GO:0046983
	Glsi03g0394	329	PRINTS	MADS domain signature	3	23	IPR002100	GO:0003677\|GO:0046983
	Glsi03g0394	329	CDD	MADS_SRF_like	2	80	IPR033897	GO:0000981\|GO:0000987\|GO:0045944
	Glsi03g0394	329	Gene3D	-	13	104	IPR036879	GO:0003677\|GO:0046983
	Glsi03g0394	329	Pfam	SRF-type transcription factor (DNA-binding and dimerisation domain)	10	51	IPR002100	GO:0003677\|GO:0046983

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi03g0394	Glsi-ChrGlsi03	6621753	6622742	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi03g0394	1	152	Type I MADS-box Gene Family	AT5G55690	32.680	2.32e-21	90.1

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MADS-M-type	Glsi03g0394		SRF-TF	1.7e-19	No_clan