Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g0393 ATGGGTCGTGGAAGATTAGCCACGAAGCTCATTGAGAACGAGAAGGCACGCAAGGCAACATTTCAGAAGAGGAAGAATGGACTAATGAAGAAAGTTCATGAACTTTCCACACTCTGTGGAGTTGATTCTTGCTTGATCATCTATAGTCCCAAGTTCAACGATCAACTAAATCATCCTAATCAACTAGAGACTTGGCCTCAGGATCCAAGACAGGTACATCGCGTTATAAAAAAGTACGAGGCCAAGATTTCCCAGAAACCTCCCAGGAACTACGATGTCTACGACTTCTTCAAGGACAGGAGGAACAAGGTTGAAGCTGAGACTTCCAAACTGAACAAAGAGAGATTCAGGATGCTGTACCCGACCTGGAACAACAATTTCAATAGTCTAGGAGAGGATCAGCTCAGGATGTTTGTTAGTATCTTGGATGTTAAGCTTGAGGATTGTAAGCTAAGAATCAATGTTCTGAGAAAGAGGCGTTATTTGAAGGAAAAAGCAGCAGAATCTGAGGGAGCAGCCATTACTAATTCCTGCAATGCTTCAAATCGAAGCCACCTCAATTTCATGAAGAACAAGTCTCAAAGCCAGATTTTTTCTGCTCCTTCGAAGAAACTAGGTGATAATAATAACCAGCTAGCATACCCACTTCATCAGTTTGACAAGAGCTCTCAAATTCAGATGCTTCACTTTGATCCGAATCTTAATGAGATGGTGGTTTGGAATGGTCAAGTTGGTACTGATAAGAATAGTGCTTTAAGTTATTATGATTCAATGCTGGAAAAGGATGGAGCCAGAAATAACCCAGACTCTTCTCTGTGCTATTACAGTGGAGGTTTGAGATCAGCGCAACCATATAACTACTATCCTTATTTGCAGAAATTTCCTTCTCAGAATATGCAGTACCATGAAGCAACTCTGCAAGCTCAGACTAATGGCTACCAAGATCTGCTTCAAGTTCAGATGTTCCACTACATGAACACAAGGAAGTAG 990 0.4141 MGRGRLATKLIENEKARKATFQKRKNGLMKKVHELSTLCGVDSCLIIYSPKFNDQLNHPNQLETWPQDPRQVHRVIKKYEAKISQKPPRNYDVYDFFKDRRNKVEAETSKLNKERFRMLYPTWNNNFNSLGEDQLRMFVSILDVKLEDCKLRINVLRKRRYLKEKAAESEGAAITNSCNASNRSHLNFMKNKSQSQIFSAPSKKLGDNNNQLAYPLHQFDKSSQIQMLHFDPNLNEMVVWNGQVGTDKNSALSYYDSMLEKDGARNNPDSSLCYYSGGLRSAQPYNYYPYLQKFPSQNMQYHEATLQAQTNGYQDLLQVQMFHYMNTRK 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g0393 329 SUPERFAMILY SRF-like 2 86 IPR036879 GO:0003677|GO:0046983
Glsi03g0393 329 CDD MADS 2 51 - -
Glsi03g0393 329 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Glsi03g0393 329 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Glsi03g0393 329 ProSiteProfiles MADS-box domain profile. 1 51 IPR002100 GO:0003677|GO:0046983
Glsi03g0393 329 Coils Coil 94 114 - -
Glsi03g0393 329 Gene3D - 13 104 IPR036879 GO:0003677|GO:0046983
Glsi03g0393 329 SMART madsneu2 1 58 IPR002100 GO:0003677|GO:0046983
Glsi03g0393 329 PANTHER MADS BOX PROTEIN 4 130 - -
Glsi03g0393 329 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 51 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g0393 Glsi-ChrGlsi03 6616353 6617342 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi03g0393 1 148 Type I MADS-box Gene Family AT5G55690 32.215 2.71e-19 84.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Glsi03g0393 SRF-TF 9.4e-20 No_clan