Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g0388 ATGGAAAAGGAGCCTCTGCTCGCATGTTTCAGTCCCAGAAAGAAGCCTCCTCCGCAGCTCAGCCCACTGCCCGAGAACGATGAGATTGTTGTTACTTTGAGTCCTTCAGAGATCAAGGACCGCCTTATATTCGGCCCTTCCACATCCCTTGAAGATTCTGCTCCTTTAGTTGAGGCCTTAACACTTTCACTTAATTCCCCAAAACCTTCTTCTTCTTCAGAAGACCTTTCGGTAAACCTCCACGACATCCAATCCCAGCAACCCCTACAACCTGGGCTCTTTGTCCCCAATCACCAATGGCGAAAAAGCCACCTCCAACGCTGCAGAACCGCGCCTGCTATTACTGTGAACAGCGGCTTGAACCACCAACCCTCTGTCCCTAGACCCCACTTTGGCTCCCAGTCAATTGTTCGCCAAGCAGTGATTCTTCTTATTGTTTATTTGTCATTGGGGGTGATTATTTATTGGTTCAATCGTCATAATTTTACTGCAATTGAGACTAATCCCGTTGTGGATGCAATATATTATTGTGTAGTGACTATGTGTACAATAGGCTACGGTGATATTACTCCCAATAGTACATCAACGAAGCTTTTCTCTATAATGTTTGTTTTGGTGGGTTTTGGGTTTGTTGATATATTGCTCAGTGGGATGGTCGGTTATGTTCTTGATTTGCAGGAGAGTCACTTGCTTAGGACAGTGAAGGGTAGTGGTGAGAAGGACACTAGATCATATATAATTGATGTGAAGAAAGGGAGAATGAGGATTAGGATGAAGGTGTCCTTGGCATTGGGGGTTGTGGTCCTTTGTATTGGAATTGGTGTCTGTGTTATGCATTTTGTGGAAAGGCTTAGTTGGATGGATTCTTTTTATCTCTCTGTTATGTCAGTTACAACTGTTGGCTATGGCGACCAGGCATTCAAGTCAATGTCTGGTAGAATCTTTGCTGCAATTTGGTTGCTTGTATCAACGCTTGCAGTTGCACGAGCATTCCTCTATTTAGCAGAGGCAAGAGTGGATAAGCGGCATAGAATGATGGCAAAATGGATTCTTGGTCAGGATATGACTGTTTCTGAGTTTCTTGCTGCAGACATAGACAATAACGGTTTTGTGAGTAAATCAGAATTTGTTATATACAAGCTCAAGGAGATGGGGAAATTGTTGGAGAAAGACATCGTGCAGGTTACTGAGAAGTTTGATAGGATAGATTCCGGAAAATGTGGAAAAATAACTCTAGCTGATCTCATGGAGGCTCGTCATTGA 1263 0.4355 MEKEPLLACFSPRKKPPPQLSPLPENDEIVVTLSPSEIKDRLIFGPSTSLEDSAPLVEALTLSLNSPKPSSSSEDLSVNLHDIQSQQPLQPGLFVPNHQWRKSHLQRCRTAPAITVNSGLNHQPSVPRPHFGSQSIVRQAVILLIVYLSLGVIIYWFNRHNFTAIETNPVVDAIYYCVVTMCTIGYGDITPNSTSTKLFSIMFVLVGFGFVDILLSGMVGYVLDLQESHLLRTVKGSGEKDTRSYIIDVKKGRMRIRMKVSLALGVVVLCIGIGVCVMHFVERLSWMDSFYLSVMSVTTVGYGDQAFKSMSGRIFAAIWLLVSTLAVARAFLYLAEARVDKRHRMMAKWILGQDMTVSEFLAADIDNNGFVSKSEFVIYKLKEMGKLLEKDIVQVTEKFDRIDSGKCGKITLADLMEARH 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g0388 420 Pfam Ion channel 142 219 IPR013099 -
Glsi03g0388 420 Pfam Ion channel 266 335 IPR013099 -
Glsi03g0388 420 SUPERFAMILY EF-hand 349 420 IPR011992 -
Glsi03g0388 420 FunFam Two-pore potassium channel 3 243 357 - -
Glsi03g0388 420 SUPERFAMILY Voltage-gated potassium channels 250 356 - -
Glsi03g0388 420 Gene3D - 265 328 - -
Glsi03g0388 420 PRINTS Two pore domain K+ channel signature 179 207 IPR003280 GO:0005267|GO:0016020|GO:0071805
Glsi03g0388 420 PRINTS Two pore domain K+ channel signature 298 307 IPR003280 GO:0005267|GO:0016020|GO:0071805
Glsi03g0388 420 Gene3D - 329 420 - -
Glsi03g0388 420 MobiDBLite consensus disorder prediction 1 25 - -
Glsi03g0388 420 ProSitePatterns EF-hand calcium-binding domain. 364 376 IPR018247 -
Glsi03g0388 420 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 143 394 IPR003280 GO:0005267|GO:0016020|GO:0071805
Glsi03g0388 420 SUPERFAMILY Voltage-gated potassium channels 133 221 - -
Glsi03g0388 420 Gene3D - 133 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g0388 Glsi-ChrGlsi03 6546915 6558002 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi03g0388 4 418 Ion Channels AT4G18160 59.070 8.74e-169 478