Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g0366 ATGGCGAAGAACGCTACAAGGTCTCAGAAGAGGTCTCCCGCATCACTTCCTGCTTCTTCTGCCTCTGCTGAATGTTCCACAAGAGCCTCTAATGAAAAAATAGTGCTGAGAATAAAATCAAATGAAGGGAGGAAGAGATCTGCTCTGGTGACTAACTCAGGAAAGAAACCCAAAGCAAAGAAAAAGAAGAAAAACAAAAAAATTGATGCTAAGAAGCCAAAGAAACCCCCCACTGCTTTCTTCTACTTCTTGGAGGATTTTCGAAGAGAATTTCAAGAGCAGAATCCAGATATCAAGTCCATGCGAGATATTGGCAAGGCATGTGGAGAGAAGTGGAAAACAATGACTTACGAGGAGAAGGTTCAATACTATGATATAGCCACAGATAAACGAGCAGAATTTGATAGAACAATGATTGAATATAACAAGAAAATGGAAAGTGGTGACTACGAAGAAACTGATGATGATGAGGAGTCAGAGTTTGACGAGTAG 492 0.4045 MAKNATRSQKRSPASLPASSASAECSTRASNEKIVLRIKSNEGRKRSALVTNSGKKPKAKKKKKNKKIDAKKPKKPPTAFFYFLEDFRREFQEQNPDIKSMRDIGKACGEKWKTMTYEEKVQYYDIATDKRAEFDRTMIEYNKKMESGDYEETDDDEESEFDE 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g0366 163 MobiDBLite consensus disorder prediction 1 74 - -
Glsi03g0366 163 MobiDBLite consensus disorder prediction 55 71 - -
Glsi03g0366 163 CDD HMG-box_AtHMGB1-like 78 134 - -
Glsi03g0366 163 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 44 160 IPR031061 -
Glsi03g0366 163 SUPERFAMILY HMG-box 59 150 IPR036910 -
Glsi03g0366 163 SMART hmgende2 72 143 IPR009071 -
Glsi03g0366 163 MobiDBLite consensus disorder prediction 1 29 - -
Glsi03g0366 163 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 73 142 IPR009071 -
Glsi03g0366 163 Gene3D High mobility group box domain 56 157 IPR036910 -
Glsi03g0366 163 Pfam HMG (high mobility group) box 73 142 IPR009071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g0366 Glsi-ChrGlsi03 6058477 6064290 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Glsi03g0366 HMG_box 5.7e-18 CL0114