Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g0354 ATGAGCGAAGAAGGAAAGAGTAGGGGAATCGCCACCGATCAACCCAACCAGCCTTACTATGGCACCTTTCAAGGCGTTGCCAACTACTGTCCTCCTGCTCCGCAGCCACAACCTCAGCCGGTGGTCGGCTTCCCTCAGCCTATTCCACCGCAGGGTTCATATGGTGGTCCCCGGTATTATCATCAAGGATACCAACACCAAACCGTTCCAGGTTATGCTGTTGCTGAGGGAATGCCCATAAGAGAACATCGTCTTCCTTGTTGTGGACTTGGTCTGGGTTGGGTATTGTTTATACTGGGTTTCTTTCTTGGTGGTGTTCCCTGGTATGTTGGAACTATCCTTCTACTATGTGTGCGGATGGATTACCGAGAAAAGCCTGGATTAGTTGCATGCACAGTTGCCACAGTCATTGCTGTGATAGCTCTTACTTTTGGTGTTACGAACAAAGCTCATGAATGAGATCAGAGTAATCCCTGTGTTCACCTTCTCTCAGAAATGGTTACTTTTAGGTTCCACCAGTACCAGGTCGTTGGGAGGGCTTTGCCCACGGAAGCAGATGAGCACCCAAAGATTTACCGCATGAAGCTTTGGGCCACGAACGAGGTTCGCGCCAAGTCAAAATTCTGGTATTTTTTGAGGAAATTGAAGAAGGTTAAGAAGAGCAATGGTCAAGTCCTTGCTATCAATGAGATTTTTGAGAAGAACCCAACCAAGATCAAGAACTATGGGATTTGGTTGCGGTATCAGAGTAGGACCGGCTATCACAACATGTACAAGGAGTTTCGTGATACCACTCTAAATGGGGCTGTTGAGCAGATGTACAACGAGATGGCTTCCCGTCACCGGGTTCGGTTCCCTTGCATTCAAATTATCAAGACTGCCACCGTACCAGCTAAGCTTTGCAAAAGGGAGTGCACCAAACAATTCCACAACTCCAAAATCAAGTTCCCATTGGTTTTCAGGAAAGTTAGGCCACCTACAAGGAAGCTAAAAACGACATACAAGGCATCAAGGCCCAACTTGTTCATGTAA 1032 0.4719 MSEEGKSRGIATDQPNQPYYGTFQGVANYCPPAPQPQPQPVVGFPQPIPPQGSYGGPRYYHQGYQHQTVPGYAVAEGMPIREHRLPCCGLGLGWVLFILGFFLGGVPWYVGTILLLCVRMDYREKPGLVACTVATVIAVIALTFGVTNKAHEXDQSNPCVHLLSEMVTFRFHQYQVVGRALPTEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQVLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEFRDTTLNGAVEQMYNEMASRHRVRFPCIQIIKTATVPAKLCKRECTKQFHNSKIKFPLVFRKVRPPTRKLKTTYKASRPNLFM 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g0354 343 Gene3D - 237 312 - -
Glsi03g0354 343 PANTHER 60S RIBOSOMAL PROTEIN L18A 167 342 IPR028877 -
Glsi03g0354 343 MobiDBLite consensus disorder prediction 31 52 - -
Glsi03g0354 343 MobiDBLite consensus disorder prediction 7 23 - -
Glsi03g0354 343 FunFam 60S ribosomal protein L18a 237 312 - -
Glsi03g0354 343 MobiDBLite consensus disorder prediction 1 54 - -
Glsi03g0354 343 Gene3D - 160 236 - -
Glsi03g0354 343 Pfam Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A 172 293 IPR023573 GO:0003735|GO:0005840|GO:0006412
Glsi03g0354 343 FunFam 60S ribosomal protein L18a 166 236 - -
Glsi03g0354 343 SUPERFAMILY RplX-like 236 311 - -
Glsi03g0354 343 Hamap 50S ribosomal protein L18Ae [rpl18a]. 171 234 IPR028877 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g0354 Glsi-ChrGlsi03 5879370 5891926 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi03g0354 165 343 Cytoplasmic Ribosomal Protein Gene Family AT2G34480 91.061 3.66e-120 343