Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g0284 ATGAAGCAGAAAATGGGCGGACAGAAGCAACATAACGTGCCCGTTCTGCCATGGATGCGGGACCCTGTTGATGTCAATCTATCTGAAGAATGCCCTCTTGATCGCGTTCCTTGCCTTGACCCCAGGTTGAAGTTGGCATTGGAGAATATGGGCATCTCTAAGCTCTTCCCTGTGCAAGTTGCAGTTTGGCAAGAGACAGTTGGGCCTGGTAATTTTGAGCGAGACCTTTGCATAAATTCACCCACGGGAAGTGGAAAAACTTTAGCTTATGCTCTGCCAATAGTGCAAAAGCTCTCAAATCGTGTTGTAAAATGCCTGCGAGCTTTAGTTGTGGTGCCTACTCGTGATCTGGCGTTACAGGTTAAAGAAGTTTTTGATGCTATTGCATCTCCGCTAGGCTTACATGTTGGCTTGGCTGTTGGTCAATCTTCAATAGCTGATGAAATTTCTAAGCTTGTGAAGTTACCAGGATATGAGGCAGGCATGTGCTATGATCCAGAAGATATTTCACTTCGGTTCCAACTTGGATTCCAAAGTAAGGTGGATATATTGGTAGCAACCCCTGGAAGGCTGATGGATCACATCAATACTACCAAAGGGTTCACACTTGAACATCTTTATTATCTTGTGGTTGATGAAACAGATCGACTTCTCCGGGAGGCCTACCAGTCCTGGTTACCTACTGTGTTGGAACTGACTCAATCTAAGGATGAGAATAGTTATCCACCAGCTGATTCTTTTCTTCCTTTTACTTTTAGTGCATTAAGAACTAGAAGGAGATGTGGTATTGAGAGGGGATTCAAAGATAAAACTTATCCTAGGTTGGCAAAGATGGTTTTATCTGCTACAATTACCCAGGACCCAGGCAAGCTCGTTCAACTTGATCTACATCACCCGATATTTTTGAAAGCTGGGCAAATGCGTTACAGGCTTCCAGAAAATTTGGAATCATTTAAACTGATATGTGAAACAAAGGTCAAACCCTTGTATTTGGCTGCCCTTTTGAAAACATTGGGAGGAGAAAAATGCATAGTTTTTACAAAATCTGTGGATTCAACACACCGTCTGTGCCAATTACTGAACTGTTTCAGTGATCTACAAATTAATATCAAGGAGTATTCAAGTCTTCAACATCAATATGTAAGAAGTAAGACATTGAAGAAATTTCGGAAAGGGGAGTTTCAAGTGCTTGTGTCATCTGATGCAATGACTCGTGGTATGGATGTTGAAGGGGTGAGAAATGTCATTAATTATGACATGCCCAAATACATAAAGACTTATGTTCACCGGGCTGGTAGGACAGCAAGAGCTGGCCAGACTGGGCGTTGCTTCACATTGATGTGCAAAGATGAGGTACGACAATTTAAGAAGTTGTTGCAAAAGGCTGATAATAGTTCTTGCTGTGATCACACTGTTCCCTCGAATTTGATTGAAGCACTTGACACAACTTACCAATCAGCACTCAAAAGAATTAAGAAGATAATTTCGGAAGCTCGAAAGAAACCCAAGAACAGTTCAGAGCCTTCTCAAGCAAGGAAAGAGAAAGAAAAAAAGCATACAGGGGAATAG 1569 0.4194 MKQKMGGQKQHNVPVLPWMRDPVDVNLSEECPLDRVPCLDPRLKLALENMGISKLFPVQVAVWQETVGPGNFERDLCINSPTGSGKTLAYALPIVQKLSNRVVKCLRALVVVPTRDLALQVKEVFDAIASPLGLHVGLAVGQSSIADEISKLVKLPGYEAGMCYDPEDISLRFQLGFQSKVDILVATPGRLMDHINTTKGFTLEHLYYLVVDETDRLLREAYQSWLPTVLELTQSKDENSYPPADSFLPFTFSALRTRRRCGIERGFKDKTYPRLAKMVLSATITQDPGKLVQLDLHHPIFLKAGQMRYRLPENLESFKLICETKVKPLYLAALLKTLGGEKCIVFTKSVDSTHRLCQLLNCFSDLQINIKEYSSLQHQYVRSKTLKKFRKGEFQVLVSSDAMTRGMDVEGVRNVINYDMPKYIKTYVHRAGRTARAGQTGRCFTLMCKDEVRQFKKLLQKADNSSCCDHTVPSNLIEALDTTYQSALKRIKKIISEARKKPKNSSEPSQARKEKEKKHTGE 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g0284 522 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 330 480 IPR001650 -
Glsi03g0284 522 SMART helicmild6 357 438 IPR001650 -
Glsi03g0284 522 Pfam DEAD/DEAH box helicase 57 290 IPR011545 GO:0003676|GO:0005524
Glsi03g0284 522 MobiDBLite consensus disorder prediction 496 522 - -
Glsi03g0284 522 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 67 302 IPR014001 -
Glsi03g0284 522 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 106 460 IPR027417 -
Glsi03g0284 522 CDD DEADc_DDX51 43 299 - -
Glsi03g0284 522 CDD SF2_C_DEAD 315 446 - -
Glsi03g0284 522 Gene3D - 316 521 IPR027417 -
Glsi03g0284 522 Gene3D - 26 305 IPR027417 -
Glsi03g0284 522 SMART ultradead3 51 318 IPR014001 -
Glsi03g0284 522 PANTHER RNA HELICASE 39 496 - -
Glsi03g0284 522 MobiDBLite consensus disorder prediction 498 522 - -
Glsi03g0284 522 Pfam Helicase conserved C-terminal domain 327 438 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g0284 Glsi-ChrGlsi03 4114300 4126181 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi03g0284 61 453 Eukaryotic Initiation Factors Gene Family AT3G13920 23.441 1.73e-26 109