Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g0274 ATGAGACTCTCTTCAGCTGGTTTTAGTCCTTCCCCCCAGGAAGGAGAAAAGCGAGTTCTTGACTCAGAACTTTGGCATGCATGTGCTGGCCCTCTGGTTTCTTTACCAGCAGTTGGAAGCCGCGTAGTCTACTTTCCGCAGGGTCATAGTGAACAGGTTGCTGCGTCGACCAACAAGGAAGTGGATGCCCATATACCCAACTACCCGAGCTTACCTCCCCAACTTATTTGTCAACTTCATAATGTGACTATGCATGCAGATTCTGAGACGGATGAAGTATATGCGCAAATGACCTTACAACCTTTGAATCCTCAAGAGCAAAAGGAGGCATACCTTCCAGCGGAGTTGGGCACTCCCAGTAAACAGCCCACAAACTACTTTTGCAAAACTTTGACTGCCAGTGACACAAGCACTCACGGGGGATTTTCTGTTCCTCGTCGGGCAGCTGAGAAAGTGTTTCCTCCATTGGATTTCTCTCAACAGCCTCCTGCTCAAGAGTTGATTGCGAGGGATTTGCATGGTAATGAATGGAAATTCAGACATATCTTCCGGGGCCAGCCCAAAAGACATCTACTTACAACAGGATGGAGTGTCTTTGTGAGTGCTAAAAGACTTGTTGCTGGTGATTCTGTGCTGTTTATCTGGAATGAAAAGAATCAATTGCTTCTTGGTATTAGGCGTGCTAATCGACCACAAACAGTGATGCCTTCTTCAGTGTTGTCAAGTGATAGCATGCACCTGGGGCTTCTTGCTGCTGCAGCTCATGCGGCTGCAACAAATAGTCGTTTCACCATTTTCTATAACCCACGGGCTAGCCCATCTGAATTTGTCATACCCTTGACAAAGTATTTTAAAGCTGTGTATCACACTCGAGTTTCAGTTGGCATGCGCTTCCGGATGCTGTTTGAAACTGAGGAATCAAGTGTGCGTCGATACATGGGCACAATAACTGGAATTAGTGACTTGGATCCTGTTCGCTGGCCAAATTCACATTGGCGTTCAGTTAAGGTTGGCTGGGATGAATCCACAGCAGGAGATAGGCAACCTAGAGTGTCCCTATGGGAAATTGAGCCATTAACAACATTTCCAATGTATCCATCTCCATTCCCTCTGAGACTTAAACGACCTTGGCCTCCAGGATTGCCTTCTTTTCATGGCATGAAGGATGATGATTTGGGCATCAATTCTCCACTATTGTGGCTTCGAGACACCACTGATAGAGGGCTTCAGTCTCTTAATTTTCAGGGACTTGGGGTCAATCCTTGGATGCAGCCAAGGCTTGATCCTTCCATTCTGAATTTGCCAACTGACATGTACCAAGCCATGGCTGCTGCTGCACTTCAGGATATGAGGACAATAGATCCATCCAAACAGCATTCTACATCCCTTCTTCAATTTCAGCAACCACAGAACTTCCCAAACAGAACTGCTGCTTTAATGCAGGCCCAGATGTTGCAGCAGTCTCAAACTCAGCAAGCTTTTCAACATGGTCAAGAGAATCAGCATCCATCTCAATCTGAGTGTCAAAGTCATTCGCATCTTCAGCATCAGCACTCCTTCATTAATCAGCACCTTCAGCAGCAGCAACAACAGCAACAGCAACAGCAAAGTTTTTCTGATCAGCAGATTTCTAGTGCTGTCTCTACAATGTCTCAGTTTGTTTCAGCTCCTCAACCCCATTCTCCACCCATGCAAGCTATCTCTTCATTTTGCCATCAGCAAAGTTTTTCTGATTCAAATGGGAACCCTGTGACTACTGCTGCTGTTTCTCCCCTGCATAGTATCTTGAATTCTTTTCCCCAGGATGAAACATCCCACCTTCTCAACCTTCCTAGAACAAGTTCTTGGATACCTGTTCAACCTTCTAGTGCCTGGCCCTCCAAGCGTGTTGCAGTGGATCCTCTCCTTTCTTCTGGAGCTTCTCAATGTGTTTTGCCTCAGTTGGATCAGTTAGGGCAGCGCCATAGCACCATGTCTCAAAATGCAGTTACATTGCCACCCTTTCCAGGCAGGGAGTGCTCAATAGATCAAGAAGGGAGCACTGATCCGCAAAACCATCTTTTATTTGGTGTTAATATAGACCCATCATCTCTTCTACTGCAGGATGGGATTTCAAGCCTTAAGGGAGTTAGAAGCAACAGTGACTCCACCACCATACCTTTTCAATCTTCTAATTACCTGAATACTACGGGCACTGAATCTGCATTGAATCCCGGAATGAATCATAGTATTGGTGATTCAGGCTTCCTGCCGACCCCAGATAATGTGGGCCCAGGAAACTCTCCAAATAAAACCTTTGTTAAGGTTTACAAGTCAGGGTCCTTCGGAAGATCATTGGATATCACTAAATTCAGCAGCTACCATGAGCTGCGCAGTGAGCTTGCCCGTATGTTTAGCCTTGAAGGCGAGTTGGAGGACCCTGTAAGATCAGGCTGGCAGCTTGTATTTGTTGACCGGGAGAATGATGTTCTTCTCCTCGGTGATGGCCCCTGGCCGGAATTCGTCAATAGTGTATGGTGTATCAAGATACTTTCCCCACAGGAAGTGCAACAAATGGGCAACAATGGCCTCGAGCTTCTGAACTCGGTTCCAATTCAAAGACTCTCTAATGGCATCTGTGAAGACTACGTGAGCCATCAGGACCCGAGAAATATAAGCACCGGGATAACAACTGTGGGGTCTCTAGACTACTGA 2694 0.4636 MRLSSAGFSPSPQEGEKRVLDSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVAASTNKEVDAHIPNYPSLPPQLICQLHNVTMHADSETDEVYAQMTLQPLNPQEQKEAYLPAELGTPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRANRPQTVMPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPLTKYFKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVKVGWDESTAGDRQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPPGLPSFHGMKDDDLGINSPLLWLRDTTDRGLQSLNFQGLGVNPWMQPRLDPSILNLPTDMYQAMAAAALQDMRTIDPSKQHSTSLLQFQQPQNFPNRTAALMQAQMLQQSQTQQAFQHGQENQHPSQSECQSHSHLQHQHSFINQHLQQQQQQQQQQQSFSDQQISSAVSTMSQFVSAPQPHSPPMQAISSFCHQQSFSDSNGNPVTTAAVSPLHSILNSFPQDETSHLLNLPRTSSWIPVQPSSAWPSKRVAVDPLLSSGASQCVLPQLDQLGQRHSTMSQNAVTLPPFPGRECSIDQEGSTDPQNHLLFGVNIDPSSLLLQDGISSLKGVRSNSDSTTIPFQSSNYLNTTGTESALNPGMNHSIGDSGFLPTPDNVGPGNSPNKTFVKVYKSGSFGRSLDITKFSSYHELRSELARMFSLEGELEDPVRSGWQLVFVDRENDVLLLGDGPWPEFVNSVWCIKILSPQEVQQMGNNGLELLNSVPIQRLSNGICEDYVSHQDPRNISTGITTVGSLDY 897
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g0274 897 FunFam Auxin response factor 125 229 - -
Glsi03g0274 897 FunFam Auxin response factor 291 363 - -
Glsi03g0274 897 SUPERFAMILY CAD & PB1 domains 760 839 - -
Glsi03g0274 897 ProSiteProfiles B3 DNA-binding domain profile. 127 229 IPR003340 GO:0003677
Glsi03g0274 897 FunFam Auxin response factor 759 853 - -
Glsi03g0274 897 ProSiteProfiles PB1 domain profile. 764 848 IPR000270 GO:0005515
Glsi03g0274 897 Pfam B3 DNA binding domain 127 228 IPR003340 GO:0003677
Glsi03g0274 897 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 17 853 IPR044835 GO:0003677|GO:0006355|GO:0009725
Glsi03g0274 897 Pfam Auxin response factor 253 336 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Glsi03g0274 897 MobiDBLite consensus disorder prediction 730 761 - -
Glsi03g0274 897 Gene3D - 125 228 IPR015300 -
Glsi03g0274 897 MobiDBLite consensus disorder prediction 483 542 - -
Glsi03g0274 897 Pfam AUX/IAA family 761 849 IPR033389 -
Glsi03g0274 897 SUPERFAMILY DNA-binding pseudobarrel domain 112 256 IPR015300 -
Glsi03g0274 897 CDD B3_DNA 126 227 IPR003340 GO:0003677
Glsi03g0274 897 Gene3D - 760 853 - -
Glsi03g0274 897 Gene3D - 291 363 - -
Glsi03g0274 897 SMART B3_2 127 229 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g0274 Glsi-ChrGlsi03 3992541 3998636 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi03g0274 1 484 B3 DNA Binding Superfamily AT1G30330 86.912 0.0 857
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Glsi03g0274 AUX_IAA 2.8e-07 CL0072