Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g0264 ATGGGCCGTCGAAAGATTGAAATGAAATTGGTGAGGGATTCTAGTTCAAGGCAAGTCACCTTCTCAAAACGCCGATCAGGTTTGTTTAAGAAAGCGAATGAGTTAGCAACCTTGTGCGGAGCTGAAGTTGCCATAGTTGCATTCTCTCCCGGGGGAAAACCCTTCTCCTTTGGCCAACCAAGCTTTGATGTTCTGGCAGATAGGTTTCTTAACCATGGTTCTAGCAAAAGGTCCCAAAATGGCAGCCACGGTGGATCCTCTTCGACAAAGAGTGATGCTATGAACATGACGATGGAGAAGCTGAACCAGCAGCTTATGAATCTGATGAAGGAGTCGAATGTGGAGAAGAAGAAGGGAAAGATGCTAGACAAGACCCTAAAGAAGGACAAACTGACCAAAGGGAAATTGCCAATGGAAGGGCTTGACTTGGCTGAGCTTCAGGAATTGAAAGATTCATTGGAAGAGCTTCACCATGATGTGATGCAGCATCAAAAAGAGACGGAGGCAAGGTCATGTTTAATGCTCCTTGCTGAGAATGCTGTGAAAGAGAGAGAAAATTATGATGCTTAA 570 0.4491 MGRRKIEMKLVRDSSSRQVTFSKRRSGLFKKANELATLCGAEVAIVAFSPGGKPFSFGQPSFDVLADRFLNHGSSKRSQNGSHGGSSSTKSDAMNMTMEKLNQQLMNLMKESNVEKKKGKMLDKTLKKDKLTKGKLPMEGLDLAELQELKDSLEELHHDVMQHQKETEARSCLMLLAENAVKERENYDA 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g0264 189 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 57 IPR002100 GO:0003677|GO:0046983
Glsi03g0264 189 SUPERFAMILY SRF-like 1 78 IPR036879 GO:0003677|GO:0046983
Glsi03g0264 189 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Glsi03g0264 189 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Glsi03g0264 189 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Glsi03g0264 189 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Glsi03g0264 189 MobiDBLite consensus disorder prediction 73 92 - -
Glsi03g0264 189 PANTHER MADS BOX PROTEIN 3 163 - -
Glsi03g0264 189 Coils Coil 143 166 - -
Glsi03g0264 189 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Glsi03g0264 189 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Glsi03g0264 189 FunFam Agamous-like MADS-box protein AGL62 13 79 - -
Glsi03g0264 189 Coils Coil 91 118 - -
Glsi03g0264 189 Gene3D - 14 84 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g0264 Glsi-ChrGlsi03 3849937 3850506 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi03g0264 1 177 Type I MADS-box Gene Family AT2G34440 45.198 7.16e-44 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Glsi03g0264 SRF-TF 1.4e-24 No_clan