Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g0254 ATGTTAGAGAGTTGTGGTGGTGGTGGCGGCCGTGATTCCGAGCTCAGTTTCGAGGCTCTGAGTTCAACCCAGCGCAGTTCCATGAGCAGTGAAAGCATTTGCAGCACCAGTTTCAGTCGTCTTTCCTTCGACCTTCTTCCCACATCGCCGGAGAGCCTCTCTCTCAAGCCTCACCGATCGTCGGACTTCGCCTACTCCGCCATCCGCTCCGCCACCTTCCGCCGCAAGAACGGCCTCACCTTCCGAGATTTCCATCTCCTTCGCCGAATCGGCGCCGGCGACATCGGCACCGTCTACCTCTGCCGCCTCCGGAACAACGCCGATGATCAGTTAGGCGGTGATGAAGATGACGACGATCCTTGCTGCTTCTACGCCATGAAGGTCGTGGACAAAGAGGCCGTGGCATTGAAGAAGAAGGCGCAGAGAGCGGAGACGGAGAGGAAGATTCTGAAGATGCTGGATCATCCCTTCCTTCCCACGCTCTACGCAGAGTTCGAGGCCTCCCATTTCTCTTGCATTGTCATGGAGTTTTGTTCCGGTGGGGACTTACACTCCCTACGCCACAGACAGATTCAGAAGCGCTTCCCTCTCGCCTCTGCAAGGTTTTATGCTGCTGAGGTTCTGGTGGCCTTAGAGTACCTCCACATGCTGGGAATCATCTACAGGGATCTAAAGCCTGAGAACGTGTTAGTCCGATCGGACGGTCACATCATGCTCTCAGATTTTGATCTCTCTATGTGCTCAGACGCAATCCCAGCCGTTGAATCACCGGACTTCTCCCCAGCTCCTGCGTTCCCAGATGCATTGCCCGACACGCGTTCGCACTCTAGCCCATTCTCATGCCTCCCGAAACGAGTGTTCCGGTCCCGCAAGGTCCAAACCCTTCAACCGAACCGGCTCTTCGTGGCCGAGCCGGTTTCCGCCCGCTCCCGTTCCTTTGTTGGGACCCACGAGTACGTCTCGCCGGAAGTGGCCTCCGGCCACTCCCACGGCAACGCCGTCGACTGGTGGTCCTTCGGGATATTCATCTATGAGCTTATCTACGGCAGGACACCGTTCGCGGCCCCATCCAACGAGGTCACGCTTCGCAGTATCATAAAGAAGCCCTTGACGTTCCCGACAGCAACTCCCTCCAGCACGCTTGAGCACCACGCGCGGGACCTGATATCCGGGTTGCTTAACAAGGACCCGGGACGCAGACTCGGGTCGAAGAGGGGCGCGGCCGACGTAAAGAAGCATCCGTTCTTCAAAGGGCTGAACCTGGCGTTGATACGAATGTTGACGCCGCCGGAGGTGCCCGGGCTGAGGAGGCAGAAAACGACGCCGTTGTGTCCCGTGAATGGAAACAGAAATAGACAACAACAGTCAACGGCGTCGTTTGATTACTTCTGA 1392 0.5718 MLESCGGGGGRDSELSFEALSSTQRSSMSSESICSTSFSRLSFDLLPTSPESLSLKPHRSSDFAYSAIRSATFRRKNGLTFRDFHLLRRIGAGDIGTVYLCRLRNNADDQLGGDEDDDDPCCFYAMKVVDKEAVALKKKAQRAETERKILKMLDHPFLPTLYAEFEASHFSCIVMEFCSGGDLHSLRHRQIQKRFPLASARFYAAEVLVALEYLHMLGIIYRDLKPENVLVRSDGHIMLSDFDLSMCSDAIPAVESPDFSPAPAFPDALPDTRSHSSPFSCLPKRVFRSRKVQTLQPNRLFVAEPVSARSRSFVGTHEYVSPEVASGHSHGNAVDWWSFGIFIYELIYGRTPFAAPSNEVTLRSIIKKPLTFPTATPSSTLEHHARDLISGLLNKDPGRRLGSKRGAADVKKHPFFKGLNLALIRMLTPPEVPGLRRQKTTPLCPVNGNRNRQQQSTASFDYF 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g0254 463 SMART serkin_6 84 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi03g0254 463 Coils Coil 126 153 - -
Glsi03g0254 463 Gene3D Transferase(Phosphotransferase) domain 1 178 246 - -
Glsi03g0254 463 MobiDBLite consensus disorder prediction 434 463 - -
Glsi03g0254 463 FunFam serine/threonine-protein kinase D6PK-like 308 434 - -
Glsi03g0254 463 SUPERFAMILY Protein kinase-like (PK-like) 63 434 IPR011009 -
Glsi03g0254 463 Gene3D Transferase(Phosphotransferase) domain 1 308 434 - -
Glsi03g0254 463 PANTHER FLIPPASE KINASE 1-RELATED 24 436 - -
Glsi03g0254 463 ProSitePatterns Serine/Threonine protein kinases active-site signature. 219 231 IPR008271 GO:0004672|GO:0006468
Glsi03g0254 463 ProSiteProfiles Protein kinase domain profile. 84 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi03g0254 463 MobiDBLite consensus disorder prediction 442 463 - -
Glsi03g0254 463 FunFam protein kinase PINOID 178 246 - -
Glsi03g0254 463 Pfam Protein kinase domain 310 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi03g0254 463 Pfam Protein kinase domain 84 246 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi03g0254 463 Gene3D Phosphorylase Kinase; domain 1 82 177 - -
Glsi03g0254 463 FunFam protein kinase PINOID 2 82 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g0254 Glsi-ChrGlsi03 3746967 3748889 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi03g0254 12 463 AGC Kinase Gene Family AT2G34650 65.727 0.0 581
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Glsi03g0254 Pkinase 1.3e-31 CL0016