Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g0231 ATGGATTTTGCTATGGGAAGTGGTGGTGGTGGTGGTGGTGGGCGGCGTGGGCGAGGTGGTAATAATCAAGAACCTAGAAACTCTAGCAAGGGAAAAAGGACCTACCATCGACATACTGCCTATCAGACAGCACAACTTGATGCTTTTTTTAAGGAGTGCCCACATCCGGATGAAAACCAACGGCGCTATTTAGGCAGGGAGCTTGGGCTTGAGCCAAGACAAGTAAAGTTTTGGTTTCAGAATAAGAGAACTCAGACAAAGGTGGTCTATGGTCTACTTTCCTTTACTCAAAATGAGAGATTAGATAACACTATCCTCCGGGCTGATAATGAAAGGATGCTAAATGAAAACCTAGCAATCAGAGAAGCACTAATGAATATAGCTTGCCCATCTTGTGGGGGTCCACCCTTTGGGGAAGAAGAGCGCGTGCTTCATCTGCAAAAGCTACAGCAAGAGAATGCTCAACTAAAAGAAGAGCATGAGAGAATAGCAAACCTTCTTGCAAGGTACTTTGGCAAACCGATGTCACATCTACAGTTGCTGGCTCCTGCCCTAGGATCTTCATTAGATCCATCGGCAGGAAGTTCCCTAAATAATAGGGCTGAAAGTCCTGGTCTTGACATAGATTTTGGTTCAGCTCTTGCAATTTCAGATGATGATATGTTGCCCGACCTAATGGGTGAAGTTACTGAAATGGAAAAGGAAATAATGGTAGAGGCTGCTACTAGTGCTATGGACGAATTAGTTAAGCTTTTACGTATCAATGAGCCCTTATGGGTCGAGTCTCCAGATGATGGAAAATTCATTCTTGATCGTGACAGCTATGAAAAGATATTTTCTAAGGCTAATCACTTCAGAAGCTCCAGTGCCCGTGTAGAATCATCAAAAGAGTCACGAATGGTTTGCATGACTGGACAGCAATTGGTTGACATGTTTTTAGATTCGGACAAATGGGTTGACCTTTTCCCAACAATTGTTACAAAAGCCCGAACAGTCGAAGTGCTCGAAAGTGGATCTTTAGGAAATCGAACTGGAGCCTTGCAGCTGATGTACGAAGAAATGCACATTCTTTCACCTTTGGTGCCACCTCGAGAATTCTACTTCCTTCGCCACTGTCAACAAGTTGAAGTAGGTGTATGGGTAATAGCAGATGTGTCATTTGATTCCCTAAGAGATAACATCCCTATTTCTCGCACATGGAAGCTTCCTTCTGGATGCATGATTCACGAAATGCCCAATGGGTTCTCCCAGGTTACTTGGGTTGAACATGTAGAAGTGAATGATAAACCCCAAACTCACCGACTATATCGAGATCTTGTTTGTAGCAATTTTGCATATGGAGCAGAAAGATGGGTTGTGACACTTCAAAGAATGTGTGAAAGATTTGCATACTCCTTGGATGAAAATATACCAAGTGATGAAGCTCAAGGAGTGATCAGTTTACCTGAAGGAAGGAGGAGCGTCATGCACCTTGCTCATCGAATGGTTAAGGACTTTTGTGGAATTTTAAACATGTCAGGTAAGCTGGACTTCCCTCATTTATCTGAGATGCATAATAGTGGGGTTAGAGTCTCCGTTCGGAAAAACACAGAACCAGGTCAGCCAGACGGCATGATTGTCAGTGCTGCTACCTCCCTTTGGCTTCCTGTCCCTCATCAGAATGTTTTCAACTTCTTCAAAGATGAGAAAAGAAGAGTTCAGTGGGATGTTCTTTCTTATGGAAATCCAGAGCATGAAATTGCACACATCTCAAATGGAATCCATCCCGGGAACTGTATATCAGTTATTCGGCCTTTCATCCCAACTGAGAACAATGTGCTGATTCTTCAAGAAACTTGCACAGATCCCTTGGGATCTTTGGTTGTGTATGCTCCACTTGATGTTCCATCTATAAATATGGTTGTAAGAGGAGAAGACTCGTTGATGGTGCCAATTCTTCCATCCGGTTTCATTATCTCCGGGGATGGCCGCGATACCTCTGTTGCTGGAGCATCAACCAGTGCAGATGCTAGCGGGTTAGGAGGGTCTCTTCTAACTGTGGCTTTCCAGATATTGGCTTGCAGCGCATCAGCAATTAGGCAATTGAACATGGAATCTGTAGCCACCATCAATACTCTTATAAGCTCAACAGTTCAGAAGATAAAGGTTGCTTTGAACTGTGCTGGTGGGGATTAA 2175 0.4372 MDFAMGSGGGGGGGRRGRGGNNQEPRNSSKGKRTYHRHTAYQTAQLDAFFKECPHPDENQRRYLGRELGLEPRQVKFWFQNKRTQTKVVYGLLSFTQNERLDNTILRADNERMLNENLAIREALMNIACPSCGGPPFGEEERVLHLQKLQQENAQLKEEHERIANLLARYFGKPMSHLQLLAPALGSSLDPSAGSSLNNRAESPGLDIDFGSALAISDDDMLPDLMGEVTEMEKEIMVEAATSAMDELVKLLRINEPLWVESPDDGKFILDRDSYEKIFSKANHFRSSSARVESSKESRMVCMTGQQLVDMFLDSDKWVDLFPTIVTKARTVEVLESGSLGNRTGALQLMYEEMHILSPLVPPREFYFLRHCQQVEVGVWVIADVSFDSLRDNIPISRTWKLPSGCMIHEMPNGFSQVTWVEHVEVNDKPQTHRLYRDLVCSNFAYGAERWVVTLQRMCERFAYSLDENIPSDEAQGVISLPEGRRSVMHLAHRMVKDFCGILNMSGKLDFPHLSEMHNSGVRVSVRKNTEPGQPDGMIVSAATSLWLPVPHQNVFNFFKDEKRRVQWDVLSYGNPEHEIAHISNGIHPGNCISVIRPFIPTENNVLILQETCTDPLGSLVVYAPLDVPSINMVVRGEDSLMVPILPSGFIISGDGRDTSVAGASTSADASGLGGSLLTVAFQILACSASAIRQLNMESVATINTLISSTVQKIKVALNCAGGD 724
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g0231 724 Pfam START domain 241 461 IPR002913 GO:0008289
Glsi03g0231 724 SMART START_1 239 461 IPR002913 GO:0008289
Glsi03g0231 724 CDD START_ArGLABRA2_like 234 460 - -
Glsi03g0231 724 ProSiteProfiles START domain profile. 230 464 IPR002913 GO:0008289
Glsi03g0231 724 FunFam Homeobox-leucine zipper protein HDG1 19 113 - -
Glsi03g0231 724 ProSiteProfiles 'Homeobox' domain profile. 29 89 IPR001356 GO:0003677
Glsi03g0231 724 Pfam Homeodomain 32 87 IPR001356 GO:0003677
Glsi03g0231 724 SMART HOX_1 31 93 IPR001356 GO:0003677
Glsi03g0231 724 MobiDBLite consensus disorder prediction 1 36 - -
Glsi03g0231 724 SUPERFAMILY Bet v1-like 480 661 - -
Glsi03g0231 724 Coils Coil 139 169 - -
Glsi03g0231 724 SUPERFAMILY Homeodomain-like 22 87 IPR009057 -
Glsi03g0231 724 SUPERFAMILY Bet v1-like 231 463 - -
Glsi03g0231 724 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 30 719 IPR042160 -
Glsi03g0231 724 Gene3D - 239 439 IPR023393 -
Glsi03g0231 724 CDD homeodomain 32 87 IPR001356 GO:0003677
Glsi03g0231 724 Gene3D - 16 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g0231 Glsi-ChrGlsi03 3480493 3485352 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi03g0231 28 719 Homeobox Transcription Factor Family AT1G73360 47.511 0.0 634
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Glsi03g0231 START 4.5e-37 CL0209