Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g0230 ATGTATGAGCACTCTTCTTGCTTTGATCCTAACAAAGTGGTGGCAGAAACTGTGGAGGCACAACCACCACCGCCACCTCCACCGTCATTCATGGCTGCCGGCAACCCCACAAACAGCAACAACGGCTTGGAAGAAAATCTCAAGCTTTCTGTGGAGGAGCAGCTTTCTTATCACCACCACCACCACCAACACCACAATCCACCAAGCCCAGAAGATATCTCCGCCTTCGCTAACGGCGTCCCCACCGCATCTATGGACGTCACACATTCACAGGAGCTGGGTCTGAACATGGGCAACTCCTACAACAATGAAAATTTGGGTGCCAATTTGGTTCAGGAGGTCATCGACGTCCTCTCCTATGAGCATTCCAATTGGGACCCCAGCGTTCAGGAATTGCAAAACTTGGGTTATGCTAATCTCCATGAACATCAACCCCATGATCAGAACCAATATCAGCAAATTGAGGTGCAAAATTGCAATCAAAGCTACAACTCTTCTTCCATTCTGGAGCCTCCTTACTCTTCACCCGATCTCTTCAACCTTCTCCATTTGCCCAGAAACCCAGCTCAGAAAACACCTAGTTTTCAGAATTCCATGGGTTTTCTTGGTGACCTTCCAATGGGAGTGGATAGCACAACAGCGTGCTCTGTGTTGTACGATCCCTTGTTTCATTTGAATCTGCCTCCACAGCCTCCAGCGCTGAGGGAACTGTTTCAGTCTCTACCCCGTGGCTATAGCTTGCCAACGAGCTCCAGAAATGGTTCCAATTCCATTTTTGGTGGAGGGGATGAGATGGAGGGAAATGGGATTGTATATGAAGATAGAGATGGGAGCCAGCTTGACAATGGAGTGCTGGAGTTTAACAGAGGGACAGCTTGTGTTGGCAAAGGAAGGAAGGGAAAAGGGACCAAGCATTTTACAACGGAAAAACAAAGAAGAGAGCAACTGAATGACAAATTCCTAGTCTTGAGGAGTCTCATCCCAAACCCCACCAAGATCGATAGAGCTTCCGTGGTGGGAGATGCCATTGAGTATATAAGAGAGCTAATTAGAACAGTCAATGAGCTAAAATTATTAGTGGAAAAGAAGAGATTTGGAAGGGAGAAGAGCAAGAGGCACAAAGCTGAAGATGATGTCGCAGAGAGTTGTGACATGAAGCCCTTTGGTAACCCAGACGGATGCATAAGGACCTCATGGCTGCAGAGGAAATCCAAAGACACTGAGGTTGATGTCCGGATTATCGACGATGAAGTCACAATCAAACTCGTTCAGAGGAAGAAGATCCATTGCTTGCTGTTTGTCTCCAAGGTTTTGGATGAACTCCAGCTGGATCTTCACCATGTTGCAGGTGGCCACGTTGGTGAATATTGCAGTTTCTTGTTCAATAGCAAGATATACGAAGGTTCTTCAGTATATGCAAGTGCCATAGCCAACAAGGTGATTGAGGTTTTAGATAGGCAGTATGCAGCAGCAGTTCCAAATACTAGCAGCTATTAG 1497 0.4676 MYEHSSCFDPNKVVAETVEAQPPPPPPPSFMAAGNPTNSNNGLEENLKLSVEEQLSYHHHHHQHHNPPSPEDISAFANGVPTASMDVTHSQELGLNMGNSYNNENLGANLVQEVIDVLSYEHSNWDPSVQELQNLGYANLHEHQPHDQNQYQQIEVQNCNQSYNSSSILEPPYSSPDLFNLLHLPRNPAQKTPSFQNSMGFLGDLPMGVDSTTACSVLYDPLFHLNLPPQPPALRELFQSLPRGYSLPTSSRNGSNSIFGGGDEMEGNGIVYEDRDGSQLDNGVLEFNRGTACVGKGRKGKGTKHFTTEKQRREQLNDKFLVLRSLIPNPTKIDRASVVGDAIEYIRELIRTVNELKLLVEKKRFGREKSKRHKAEDDVAESCDMKPFGNPDGCIRTSWLQRKSKDTEVDVRIIDDEVTIKLVQRKKIHCLLFVSKVLDELQLDLHHVAGGHVGEYCSFLFNSKIYEGSSVYASAIANKVIEVLDRQYAAAVPNTSSY 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g0230 498 Pfam Helix-loop-helix DNA-binding domain 303 349 IPR011598 GO:0046983
Glsi03g0230 498 CDD bHLH_AtMYC1_like 305 371 IPR045896 -
Glsi03g0230 498 PANTHER TRANSCRIPTION FACTOR BHLH91 1 491 IPR045895 GO:0006355|GO:0048658
Glsi03g0230 498 SMART finulus 306 355 IPR011598 GO:0046983
Glsi03g0230 498 MobiDBLite consensus disorder prediction 17 43 - -
Glsi03g0230 498 Gene3D - 297 384 IPR036638 GO:0046983
Glsi03g0230 498 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 298 362 IPR036638 GO:0046983
Glsi03g0230 498 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 300 349 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g0230 Glsi-ChrGlsi03 3469697 3471738 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi03g0230 7 494 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G31220 40.115 1.25e-92 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Glsi03g0230 HLH 4.9e-11 No_clan