Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g0215 ATGGCTGAATCTCAATACTCTCCCACTCCCACTCTCAGCCCCACCACGACCACCACCCCACCTACCCCGTCCAGCCTCAACCTCATGGTCCTCCTGGCGGCCATTGTATGCGCCTTCCTCTGCGCCCTCGGCCTCAACACTATGCTACAGTGTGTGTTCCAGTGTGCTAACCAGGTCCTCACCGAACCACGGCAATGGATCGCCTCTCGCCGGATCAACTCCGGCCTCAAGAAGAAAGAAATGGTAGCGTTGCCGACTTTAACTTACAATGAATCGTCGCCGTCGACGTCGTCGTCTTCGACTTGTTCTTCTAATTGTGCCATTTGCTTGGTAGATTTCAGCGACGGCGACAGAATTAGGTTCCTCCCGAAGTGTAATCACGGGTTCCATGTGGGTTGCATAGATAAGTGGCTGCTTTCTCATTCTTCTTGCCCCACTTGCCGCCATCTTCTCAAGTCCAATGATTTTTTACATATTCTCACAGCCTAG 489 0.5256 MAESQYSPTPTLSPTTTTTPPTPSSLNLMVLLAAIVCAFLCALGLNTMLQCVFQCANQVLTEPRQWIASRRINSGLKKKEMVALPTLTYNESSPSTSSSSTCSSNCAICLVDFSDGDRIRFLPKCNHGFHVGCIDKWLLSHSSCPTCRHLLKSNDFLHILTA 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g0215 162 CDD RING-H2_EL5-like 106 148 - -
Glsi03g0215 162 SMART ring_2 106 147 IPR001841 -
Glsi03g0215 162 MobiDBLite consensus disorder prediction 1 20 - -
Glsi03g0215 162 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 64 153 IPR013083 -
Glsi03g0215 162 FunFam E3 ubiquitin-protein ligase ATL6 64 154 - -
Glsi03g0215 162 Pfam Ring finger domain 105 148 IPR001841 -
Glsi03g0215 162 ProSiteProfiles Zinc finger RING-type profile. 106 148 IPR001841 -
Glsi03g0215 162 SUPERFAMILY RING/U-box 105 153 - -
Glsi03g0215 162 PANTHER RING-H2 FINGER PROTEIN ATL78 25 152 IPR044602 GO:0016567|GO:0016740
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g0215 Glsi-ChrGlsi03 3348132 3348620 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi03g0215 7 151 C3H Transcription Factor Family AT1G20823 40.909 1.56e-33 115