Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g0205 ATGGCGCCGAGTACCAAAGACCTTCAGCTAACTTCTGTCGCCGCCGCTGATGACGCCGATGACCTGGAGGACGTGCGGCTGTTGGATTCCTATGAAGATAGAAACTACAATGATACAGATGGAATCGAGGAGGTGAAGCGAATTCAAGTCAGAGTTACCGGCATGACCTGTGCTGCTTGCTCCAATTCCGTCGAAGCAGCTCTGAAGGCCGTCGATGGCGTCATCAGCGCCTCTGTGGCTCTGCTTCAGAACAAGGCTGACGTGGTGTTCAACCCGACTCTGGCTAAGGATGTAGATATAAAAAATGCAATTGAAGATGCAGGGTTTGAAGCAGACATATTACCTGAACCCAGTACACTTGGAACAAAGCCGCATGGGACCTTGGTGGGACAGTTCACAATTGGTGGTATGACATGTGCAGCCTGTGTAAATTCTGTTGAAGGTATATTGAGAAATCTTCCGGGGGTCAAAAGGGCTGTGGTAGCTTTGGCTACTTCCTTAGGAGAAGTTGAATATTATGCTAATGTAATTAGTAAAGATGATATAGTCAATGCAATTGAAGATGCTGGTTTTGAAGCTTCATTTGTACAGAGCAGTGAGCAGGATAAAATAACTTTATTGGCTGTTGGTGTTTACAGCCTGATTGATGCGCAAGCCTTAGAAGGCATGCTCAGCAGTATGAAAGGAGTGAGGCAGTTTCGTTTTGACCAGATATCTAATGAATTGGAAGTTCTTTTTGATCCTGAAGTTCTCAGCTCTAGATCCTTAGTTGATGGGATCGAGGGGGGAAGCAATGGCAAGTTTAAATTGCATATTAGAAGCCCTTATACAAGGATGGCTTCCAAAGATGTTGAAGAGACCTCAAATATGTTTCGGCTATTTATCTCTAGCCTGTCTCTTAGTATTCCTCTCTTCTTCATACGGGTAGTTTGTCCTCATATACCAATGGTATATTCCTTATTACTTTGGAGATGTGGGCCATTCCTCATGGGTGACTGGTTGAAGTGGGCATTGGTGAGTGTAATTCAATTTGTAATTGGGAAGCGCTTCTACATTGCGGCTGGCAGAGCACTTAGAAATGGTTCTACTAACATGGATGTCTTGGTTGCTTTGGGAACTACAGCATCTTATGTCTATTCTGTTTGTGCTCTTCTGTATGGTGCTCTTACTGGATTTTGGTCTCCAACATATTTTGAGACAAGTGCCATGCTCATAACATTTGTATTGTTGGGCAAGTATTTGGAATGCCTTGCCAAGGGAAAGACATCAGATGCCATCAAGAAGTTAGTGGAGCTTGCTCCTGCAACAGCTTTATTGGTTGTCAAGGATAAAGGTGGAAGATCTATTGAAGAGAGGGAAATAGAGTCTTTGCTCATTCAACCTGGTGACACATTAAAAGTTCTTCCAGGTACAAAGATTCCTGCTGATGGCATTGTTACATGGGGCTCAAGTTACGTAAATGAGAGCATGGTAACTGGTGAATCTGTACCTGTTTTAAAGGAAGTGAATGCAACTGTTATTGGAGGTACAATAAATTTTCATGGTGTTCTTCTCATTCAAGCCACTAAGGTAGGATCTGATACAGTTTTGAGTCAGATAATTAGCTTGGTTGAGACAGCCCAGATGTCCAAAGCCCCCATTCAGAAATTTGCTGATTATGTAGCAAGCATATTTGTTCCCACAGTGGTTTCTTTGGCACTGTTGACGTTATTGAGTTGGTATATTGCTGGGGCTCTTGGAGCTTATCCAGAAGAATGGCTGCCAGAAAATGGAAATCATTTTGTTTTTGCCCTTATGTTTTCAATATCTGTAGTGGTGATTGCTTGTCCCTGTGCACTTGGCTTGGCAACACCTACAGCTGTCATGGTAGCAACAGGCGTTGGGGCTAACAATGGAGTGTTGATTAAAGGAGGAGATGCCTTGGAAAGGGCTCAGATGGTGAAGTATGTGATATTTGATAAAACAGGCACTTTAACTCAGGGAAAAGCTACCTTTACTACTGCCAAGGTATTCACAGGAATGGATCGTGGAGAATTTCTAAAATTGGTGGCTTCTGCAGAGGCTAGCAGTGAACATCCACTGGCCAAAGCAATAGTAGAATATGCCCGTCATTTTCATTTCTTTGATGGGTTCCCTGCAACTACTGGTATTAAAGATGATGCCAAGGAGTTAAAGTCTGGATGGCTTTTTGATGTCTCAGATTTCTCTGCTCTTCCAGGAAGAGGCGTTCAGTGCTTTATAGATGGGAAGCGTGTTTTGGTTGGTAATAGGAAACTAATGGTGGAAAGTGGCATAGATATTTCAACCGAAGTGGAAAGTTTTGTGGTAGAGCTGGAAGAAAGTGCAAATACAGGGATACTGGTTGCGTATGATGATAAGCTAACAGGAGTTATAGGGATTGCAGACCCACTAAAAAGAGAGGCTTCTGTGGTTATTGAGGGCCTCCAGAAAATGGGCGTGAGACCCATTATGGTTACAGGAGATAACTGGAGAACAGCTGAAGCTGTTGCCAAGCAGGTTGGCATTCAAGACGTTAAGGCAGAGGTTATGCCTGCAGGAAAAGCTGATGTTGTTCGTTCATTCCAAAATGATGGAAGCATAGTTGCAATGGTAGGTGATGGTATCAATGACTCTCCTGCGTTAGCTGCTGCAGATGTTGGGATTGCGATTGGGGCTGGGACAGATATCGCAATAGAAGCTGCTGACTATGTGTTGATGAGAAATAATCTGGAAGATGTAATCACGGCCATTGATCTCTCTAGGAAGACCTTTTCTCGCATTCGATTGAATTATGTGTTTGCAATGGCCTACAATGTGGTTGCTATACCTGTTGCTGCTGGAGTTTTCTATCCTTCACTAGGGATCAAGCTTCCACCATGGGTTGCTGGTACATGCATGGCTCTCTCGTCAGTAAGTGTTGTATGCTCTTCTTTGCTTCTCAGGAGATATAAAAGACCTAGACTTACTAAAATACTTGAAATAGTTGTAGAATAG 2994 0.4332 MAPSTKDLQLTSVAAADDADDLEDVRLLDSYEDRNYNDTDGIEEVKRIQVRVTGMTCAACSNSVEAALKAVDGVISASVALLQNKADVVFNPTLAKDVDIKNAIEDAGFEADILPEPSTLGTKPHGTLVGQFTIGGMTCAACVNSVEGILRNLPGVKRAVVALATSLGEVEYYANVISKDDIVNAIEDAGFEASFVQSSEQDKITLLAVGVYSLIDAQALEGMLSSMKGVRQFRFDQISNELEVLFDPEVLSSRSLVDGIEGGSNGKFKLHIRSPYTRMASKDVEETSNMFRLFISSLSLSIPLFFIRVVCPHIPMVYSLLLWRCGPFLMGDWLKWALVSVIQFVIGKRFYIAAGRALRNGSTNMDVLVALGTTASYVYSVCALLYGALTGFWSPTYFETSAMLITFVLLGKYLECLAKGKTSDAIKKLVELAPATALLVVKDKGGRSIEEREIESLLIQPGDTLKVLPGTKIPADGIVTWGSSYVNESMVTGESVPVLKEVNATVIGGTINFHGVLLIQATKVGSDTVLSQIISLVETAQMSKAPIQKFADYVASIFVPTVVSLALLTLLSWYIAGALGAYPEEWLPENGNHFVFALMFSISVVVIACPCALGLATPTAVMVATGVGANNGVLIKGGDALERAQMVKYVIFDKTGTLTQGKATFTTAKVFTGMDRGEFLKLVASAEASSEHPLAKAIVEYARHFHFFDGFPATTGIKDDAKELKSGWLFDVSDFSALPGRGVQCFIDGKRVLVGNRKLMVESGIDISTEVESFVVELEESANTGILVAYDDKLTGVIGIADPLKREASVVIEGLQKMGVRPIMVTGDNWRTAEAVAKQVGIQDVKAEVMPAGKADVVRSFQNDGSIVAMVGDGINDSPALAAADVGIAIGAGTDIAIEAADYVLMRNNLEDVITAIDLSRKTFSRIRLNYVFAMAYNVVAIPVAAGVFYPSLGIKLPPWVAGTCMALSSVSVVCSSLLLRRYKRPRLTKILEIVVE 997
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g0205 997 CDD HMA 131 194 IPR006121 GO:0046872
Glsi03g0205 997 CDD HMA 49 111 IPR006121 GO:0046872
Glsi03g0205 997 ProSiteProfiles Heavy-metal-associated domain profile. 46 112 IPR006121 GO:0046872
Glsi03g0205 997 SFLD C1.7: P-type atpase like 633 923 - -
Glsi03g0205 997 Gene3D - 658 750 IPR023299 GO:0000166
Glsi03g0205 997 Gene3D - 751 802 IPR023299 GO:0000166
Glsi03g0205 997 ProSiteProfiles Heavy-metal-associated domain profile. 128 194 IPR006121 GO:0046872
Glsi03g0205 997 PANTHER P-TYPE CATION-TRANSPORTING ATPASE 31 992 - -
Glsi03g0205 997 SUPERFAMILY HMA, heavy metal-associated domain 127 199 IPR036163 GO:0046872
Glsi03g0205 997 SUPERFAMILY Calcium ATPase, transduction domain A 451 537 IPR008250 -
Glsi03g0205 997 ProSitePatterns E1-E2 ATPases phosphorylation site. 653 659 IPR018303 -
Glsi03g0205 997 NCBIfam heavy metal translocating P-type ATPase 365 980 IPR027256 GO:0006812|GO:0016020|GO:0019829
Glsi03g0205 997 Gene3D - 419 541 - -
Glsi03g0205 997 NCBIfam HAD-IC family P-type ATPase 743 953 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Glsi03g0205 997 NCBIfam HAD-IC family P-type ATPase 404 673 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Glsi03g0205 997 FunFam Copper-exporting P-type ATPase A 127 196 - -
Glsi03g0205 997 Pfam haloacid dehalogenase-like hydrolase 647 885 - -
Glsi03g0205 997 SUPERFAMILY HMA, heavy metal-associated domain 44 116 IPR036163 GO:0046872
Glsi03g0205 997 FunFam Copper-transporting ATPase RAN1 658 750 - -
Glsi03g0205 997 Pfam Heavy-metal-associated domain 132 192 IPR006121 GO:0046872
Glsi03g0205 997 Pfam Heavy-metal-associated domain 50 110 IPR006121 GO:0046872
Glsi03g0205 997 FunFam Copper-exporting P-type ATPase A 44 114 - -
Glsi03g0205 997 Gene3D - 618 928 IPR023214 -
Glsi03g0205 997 Gene3D - 45 116 - -
Glsi03g0205 997 PRINTS P-type cation-transporting ATPase superfamily signature 796 807 - -
Glsi03g0205 997 PRINTS P-type cation-transporting ATPase superfamily signature 871 890 - -
Glsi03g0205 997 PRINTS P-type cation-transporting ATPase superfamily signature 651 665 - -
Glsi03g0205 997 PRINTS P-type cation-transporting ATPase superfamily signature 487 501 - -
Glsi03g0205 997 PRINTS P-type cation-transporting ATPase superfamily signature 818 828 - -
Glsi03g0205 997 PRINTS P-type cation-transporting ATPase superfamily signature 894 906 - -
Glsi03g0205 997 Gene3D - 130 195 - -
Glsi03g0205 997 FunFam Copper-transporting ATPase 1, putative 419 541 - -
Glsi03g0205 997 ProSitePatterns Heavy-metal-associated domain. 134 163 IPR017969 GO:0046872
Glsi03g0205 997 ProSitePatterns Heavy-metal-associated domain. 52 82 IPR017969 GO:0046872
Glsi03g0205 997 FunFam Probable copper-transporting ATPase HMA5 758 928 - -
Glsi03g0205 997 FunFam Copper-exporting P-type ATPase 751 802 - -
Glsi03g0205 997 CDD P-type_ATPase_Cu-like 292 967 - -
Glsi03g0205 997 SFLD p-type atpase 633 923 IPR044492 -
Glsi03g0205 997 PRINTS Copper-transporting ATPase 1 signature 102 122 - -
Glsi03g0205 997 PRINTS Copper-transporting ATPase 1 signature 47 72 - -
Glsi03g0205 997 PRINTS Copper-transporting ATPase 1 signature 73 96 - -
Glsi03g0205 997 NCBIfam copper ion binding protein 48 111 IPR006122 GO:0005507
Glsi03g0205 997 NCBIfam copper ion binding protein 131 193 IPR006122 GO:0005507
Glsi03g0205 997 Pfam E1-E2 ATPase 434 630 - -
Glsi03g0205 997 SUPERFAMILY HAD-like 650 977 IPR036412 -
Glsi03g0205 997 SUPERFAMILY Calcium ATPase, transmembrane domain M 385 945 IPR023298 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g0205 Glsi-ChrGlsi03 3245531 3251907 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi03g0205 1 997 Primary Pumps ATPases AT5G44790 75.694 0.0 1513