Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g0193 ATGGCAGCTGCGGCAACAGCGTCGGTGGTGCCGGCCAATCGGCGGCGACTCGCCAACGCGCCGGAGGATATGGAGTTCGAAACGACGGAGGGAGTAGAGCCTATCTCGAGCTTCGAGAACATGGGTATCAAGGAAGATCTGCTCCGAGGCATCTATGCATATGGGTTTGAGAAGCCTTCGGCAATCCAGCAGCGAGCCGTTAGACCCATAATTGAAGGACGAGATGTCATAGCTCAGGCGCAATCTGGTACTGGCAAAACGTCTATGATTGCCCTCACTGTTTGCCAAGTCGTCGATACTTCTATTAGAGAAGTTCAGGTCTTGATCTTGTCACCGACAAGAGAATTAGCCTCACAGACTGAGAAGGTTATCTTGGCTATTGGAGATTACATAAATATACAAGCTCATGCATGCATTGGAGGTAAAAGTGTGGGAGAAGATATAAGGAAGCTTGAGTACGGGGTTCATGTGGTGTCCGGAACGCCTGGACGAGTTTGTGACATGATCAAGAGGAGAACATTGCGCACTAGAGCTATTAAGTTACTAGTTCTTGATGAATCTGATGAAATGTTGAGCAGAGGATTTAAAGATCAGATTTATGATGTGTATAGATATCTCCCTCCAGAGCTTCAGGTTTGCTTGATTTCTGCTACCCTTCCTCATGAAATACTGGAGATGACAAATAAGTTCATGACAGATCCTGTAAGGATCCTTGTAAAACGTGATGAGTTGACTTTGGAGGGCATCAAGCAATTTTTTGTGGCAGTTGAAAGGGAAGATTGGAAGTTTGATACTCTATGTGATCTTTATGATACCCTCACCATCACTCAAGCTGTTATTTTCTGTAATACTAAGCGAAAGGTGGATTGGTTAACTGAAAAAATGCGGAACAATAATTTCACTGTCTCATCAATGCATGGGGACATGCCTCAGAAAGAAAGAGATGCAATTATGGGGGAGTTTCGTGCTGGTACAACCCGTGTACTAATCACAACAGATGTTTGGGCTCGTGGTCTTGATGTTCAGCAGGTTTCTCTAGTTATCAATTATGACCTTCCAAATAATCGTGAGCTTTACATTCATCGAATTGGTCGATCTGGACGTTTTGGACGCAAGGGTGTTGCAATAAACTTTGTCAAGAGTGATGATATCAAGATCCTGAGAGATATTGAGCAATATTACAGTACTCAGATTGATGAAATGCCAATGAATGTTGCTGATCTTATATAA 1230 0.4358 MAAAATASVVPANRRRLANAPEDMEFETTEGVEPISSFENMGIKEDLLRGIYAYGFEKPSAIQQRAVRPIIEGRDVIAQAQSGTGKTSMIALTVCQVVDTSIREVQVLILSPTRELASQTEKVILAIGDYINIQAHACIGGKSVGEDIRKLEYGVHVVSGTPGRVCDMIKRRTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPELQVCLISATLPHEILEMTNKFMTDPVRILVKRDELTLEGIKQFFVAVEREDWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRNNNFTVSSMHGDMPQKERDAIMGEFRAGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIKILRDIEQYYSTQIDEMPMNVADLI 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g0193 409 Pfam Helicase conserved C-terminal domain 262 370 IPR001650 -
Glsi03g0193 409 FunFam Eukaryotic initiation factor 4A-III 243 409 - -
Glsi03g0193 409 FunFam Eukaryotic initiation factor 4A-III 19 240 - -
Glsi03g0193 409 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 36 64 IPR014014 GO:0003724
Glsi03g0193 409 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 67 237 IPR014001 -
Glsi03g0193 409 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 248 409 IPR001650 -
Glsi03g0193 409 SMART helicmild6 289 370 IPR001650 -
Glsi03g0193 409 Gene3D - 241 409 IPR027417 -
Glsi03g0193 409 SMART ultradead3 55 252 IPR014001 -
Glsi03g0193 409 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 104 392 IPR027417 -
Glsi03g0193 409 CDD DEADc_EIF4AIII_DDX48 38 238 - -
Glsi03g0193 409 Gene3D - 21 240 IPR027417 -
Glsi03g0193 409 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 33 392 - -
Glsi03g0193 409 CDD SF2_C_DEAD 249 379 - -
Glsi03g0193 409 Pfam DEAD/DEAH box helicase 61 223 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g0193 Glsi-ChrGlsi03 3030594 3035138 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi03g0193 26 409 Eukaryotic Initiation Factors Gene Family AT3G19760 89.583 0.0 731