Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g0143 ATGGAAGCCAATAATGGGAATACAGAGCAGATTGTGGATGTTCGGTCGGTAGTTGAAGCAGTTTCTGCAGACGACGGTGATGCTCCTGTGTACAAGGTTGAAAGCCTGTGCATGCGTTGCGGTGAAAACGGGATGACAAGATTTCTATTGACTTTAATTCCGCACTTCAGAAAGATTTTGTTGTCAGCTTTTGAATGCCCTCATTGTGGTGAGAGGAACAACGAAGTACAGTTTGCTGGAGAAATTCAACCACGTGGTTGCTGCTACTGTTTGGAGATCCCATCAGGCAATCCGAAGATGCTCAACCGACAAGTGGTAAAGTCGGAATCTGCTACTATTAAGATACCAGAATTGGATTTTGAGATTCCTCCGGAGGCTCAACGTGGCACCCTATCAACGGTGGAAGGGATACTAGTACGAGCTGCTGATGAACTTCAGGCCCTTCAAGAGGAGCGCAGAAAAGTGGATCCACAGACAGCTGAAGCAATTGATCAGTTCTTGATGAAACTGAGAGCTTGCACGGTTGGAGAGTTTTCATTCACATTTATTCTTGATGATCCTGCTGGGAATAGCTTCATTGAAAATCCGTTTGCTCCATCATCTGATCCATCATTGAGTATCAAGTTCTATGAGCGTACTCCTGAGCAACAAGCATCATTGGGATATCTTGTTGACTCATCACAGATTGAAGGGACTCATGATGTAGCATCAACAGGGGAAGAGGCTGGGGTTGCTGATCAAGTACGGACAGAACCACATGGGTCAGTAGGGGCAGCAGCTGGTCATCGAGCCATTGCACAGAGTAATAGTGACGAAATTGCAGAAGCTTTATTTAGATATACTGCACCAGAAGAGGTGATGACTTTCCCATCAACTTGTGGTGCATGTGCCACTAAGTGTGAGACCCGAATGTTTGTCACCAAAATTCCATACTTCCAGGAAGTCATTGTTATGGCATCCACCTGTGATTCTTGTGGTTACCGCAACTCTGAGTTGAAACCTGGTGGGCGAATTCCTGAAAAAGGAAAGAAGATCACTCTCCTTGTGAAAAATGTTAATGATCTAAGCCGTGATGTAATTAAGTCTGATACTGCAAGCGTAAAAGTCCCTGAACTTGACTTGGAGCTAACTAGTGGCACTCTAGGAGGAATTGTTACAACTGTTGAAGGTTTAATCACAAAAATTAGTGAAAGCCTCGAGAGGGTGCATGGATTTACTTTTGGGGATAGTCTTGATGAACATAAAAGAAGCAAGTGGATAGACTTTAAAGCAAGGCTAAACAAGCTTCTTAGCTTGGAAGAACCTTGGACTTTAATTCTTGATGATGCATTAGCGAATTCTTTCATAGCACCAGCAACTGATGATCTAAAAGACGACAATCAATTAACATTTGAGGAATATGAGAGGTCATGGGAGCAAAACGAAGAATTGGGTCTGAATGATATCGATACTTCTTCTGCCGATGCTGCTTATGATTCAGCAAATACTACTAAAATTGAGTGA 1503 0.4318 MEANNGNTEQIVDVRSVVEAVSADDGDAPVYKVESLCMRCGENGMTRFLLTLIPHFRKILLSAFECPHCGERNNEVQFAGEIQPRGCCYCLEIPSGNPKMLNRQVVKSESATIKIPELDFEIPPEAQRGTLSTVEGILVRAADELQALQEERRKVDPQTAEAIDQFLMKLRACTVGEFSFTFILDDPAGNSFIENPFAPSSDPSLSIKFYERTPEQQASLGYLVDSSQIEGTHDVASTGEEAGVADQVRTEPHGSVGAAAGHRAIAQSNSDEIAEALFRYTAPEEVMTFPSTCGACATKCETRMFVTKIPYFQEVIVMASTCDSCGYRNSELKPGGRIPEKGKKITLLVKNVNDLSRDVIKSDTASVKVPELDLELTSGTLGGIVTTVEGLITKISESLERVHGFTFGDSLDEHKRSKWIDFKARLNKLLSLEEPWTLILDDALANSFIAPATDDLKDDNQLTFEEYERSWEQNEELGLNDIDTSSADAAYDSANTTKIE 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g0143 500 SMART zpr1 291 451 IPR004457 GO:0008270
Glsi03g0143 500 SMART zpr1 35 195 IPR004457 GO:0008270
Glsi03g0143 500 FunFam Zinc finger protein ZPR1 337 479 - -
Glsi03g0143 500 FunFam zinc finger protein ZPR1 81 222 - -
Glsi03g0143 500 Coils Coil 131 151 - -
Glsi03g0143 500 Gene3D ZPR1, zinc finger domain 26 80 IPR042452 -
Glsi03g0143 500 Gene3D ZPR1, zinc finger domain 281 336 IPR042452 -
Glsi03g0143 500 FunFam Zinc finger protein ZPR1 25 80 - -
Glsi03g0143 500 PANTHER ZINC FINGER PROTEIN ZPR1 13 493 IPR040141 -
Glsi03g0143 500 NCBIfam ZPR1 zinc finger domain 37 219 IPR004457 GO:0008270
Glsi03g0143 500 NCBIfam ZPR1 zinc finger domain 292 483 IPR004457 GO:0008270
Glsi03g0143 500 Pfam ZPR1 zinc-finger domain 35 194 IPR004457 GO:0008270
Glsi03g0143 500 Pfam ZPR1 zinc-finger domain 291 449 IPR004457 GO:0008270
Glsi03g0143 500 Gene3D ZPR1, A/B domain 81 222 IPR042451 -
Glsi03g0143 500 Gene3D ZPR1, A/B domain 337 479 IPR042451 -
Glsi03g0143 500 FunFam Zinc finger protein ZPR1 282 336 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi03g0143 5 499 C2H2 Transcription Factor Family AT5G22480 77.016 0.0 789