Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g0138 ATGGAGGATCGCGCAGTTTTAGGTGGTGGAGCACCTATTAATATTGGAAGGGAAGAAGAGGAAGATGAATTTTGCAGTTGTTGTGAAGATGAAGAAGAAGAAGAAGTGTGGAAAGAAACTGAGCAGGCGCTGGTGGAAGAGTTGAAAGATGACTTTGATGAATCTTCAGTAAAAATGTTCTTCAAGGGCTTGTCTATTGCTGGAGTTGAAAATTCCAGTTCTGGGTTTTCTGGAATTGGAGTGTTCATGGAAAGACCATCTGGTCTTCCTGTTATCCGTGTGCAGAAAAAGCTTGATTTTTATGCAGAGGAGCCACTAGTTGACTACTTGGCTCTCATGGATGGCTTGCTGGAAGCTGTGCAGAATAACATCCGCCGTGTCTATGCCTTTACAGATTCTGAGTTGTTGTACGATCAGATAACATTTGAGAAAAATCTTGAGATGCCGCTTTTGATGGCACTGAGAGAAAGGGTTCTTGAGCATGCCAATAATTTTGAAGCTTTTGTTCTGAATCTTGTTCCCAGTATTGATCTTGAGCAGCCACTGCAACTAGCCAAAGTGGGTATTGGACTTGTCTCTTTTCCTTTAAATGGTGAGCGACTACTTGAAAACTGTTCTATTTGTTGCGAGGACAAGCCATTGCCAATAATGATCACCATGAAATGTTCACATAAGTTTTGTTCGCATTGTTTGAGGGCTTATGTTGATGGAAAAATACAGTCTTGTACAGTCCCAATAAGATGCCCACAACCGAGATGCAAGTATTATATCACCATAACAGAGTGCAAATGTTTTCTTCCGTTCAATTCTTTTGAGTCCTTGGAGAAAGCCTTTGATGAAGCAAACATTCTACATTCAGATAGAATTTACTGCCCATTTCCAAATTGTTCTGTTCTCCTTGATCCTCATGAATGTTTATCAGCTAGGGCTAGTTCATCTAGCAAATCAGACAATTCTTGTGTTGAGTGTCCTATTTGTCAGAGGTTCATCTGTGTGGACTGTGAGGTCCCTTGGCATTCTTCTATGAGCTGTGAAGAGTACCAGAATCTACCAGAGGAGGAGAGGGATGCTTCTGACATTACCTTGCATCGCCTTGCTCAAAATAAAAGGTGGAAGCGTTGTCAGCAGTGTCGTCGGATGATTGAGCTCACTCAAGGTTGTTATCACGTGACATGCTGGTGTGGTCATGAGTTTTGCTATTCTTGTGGCGCGGAATACAGGGACAGCCAACAGACGTGTCAGTGTGTATTTTGGGATGAAGATAACTCCGAAGATTCAGTGACTCACTCTCTTCAAGAATCAGAGCAATGGGCATGGGAGACTTTTAATTCTCTCCCCATGTTCATGGATGCATACTCGGACCAAGAACGATCACAGCTCACTCTTATACAAAGGTTCCTAGCCGGAGGTTTCAGCTTGAGTGACCATCATCCTTACCAATCTCCTCCCCACTGTACAGACTCCTATGTCGACACAATGAAGGATCTCCATCAGCTTCCATGGCTCGAGAGATTCGTGTCAGTGATAAGTGACAACTACTATGAAGATTATATTCAGTAA 1560 0.4269 MEDRAVLGGGAPINIGREEEEDEFCSCCEDEEEEEVWKETEQALVEELKDDFDESSVKMFFKGLSIAGVENSSSGFSGIGVFMERPSGLPVIRVQKKLDFYAEEPLVDYLALMDGLLEAVQNNIRRVYAFTDSELLYDQITFEKNLEMPLLMALRERVLEHANNFEAFVLNLVPSIDLEQPLQLAKVGIGLVSFPLNGERLLENCSICCEDKPLPIMITMKCSHKFCSHCLRAYVDGKIQSCTVPIRCPQPRCKYYITITECKCFLPFNSFESLEKAFDEANILHSDRIYCPFPNCSVLLDPHECLSARASSSSKSDNSCVECPICQRFICVDCEVPWHSSMSCEEYQNLPEEERDASDITLHRLAQNKRWKRCQQCRRMIELTQGCYHVTCWCGHEFCYSCGAEYRDSQQTCQCVFWDEDNSEDSVTHSLQESEQWAWETFNSLPMFMDAYSDQERSQLTLIQRFLAGGFSLSDHHPYQSPPHCTDSYVDTMKDLHQLPWLERFVSVISDNYYEDYIQ 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g0138 519 FunFam RBR-type E3 ubiquitin transferase 342 467 - -
Glsi03g0138 519 SMART ibrneu5 354 413 IPR002867 GO:0008270
Glsi03g0138 519 SMART ibrneu5 272 344 IPR002867 GO:0008270
Glsi03g0138 519 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 202 282 IPR013083 -
Glsi03g0138 519 Gene3D - 58 190 IPR036397 GO:0003676
Glsi03g0138 519 CDD BRcat_RBR_unk 286 347 - -
Glsi03g0138 519 ProSitePatterns Zinc finger RING-type signature. 222 231 IPR017907 -
Glsi03g0138 519 Gene3D - 342 467 - -
Glsi03g0138 519 SUPERFAMILY Ribonuclease H-like 72 174 IPR012337 -
Glsi03g0138 519 FunFam RBR-type E3 ubiquitin transferase 57 192 - -
Glsi03g0138 519 CDD Rcat_RBR_unk 370 406 - -
Glsi03g0138 519 ProSiteProfiles Zinc finger RING-type profile. 205 252 IPR001841 -
Glsi03g0138 519 Pfam IBR domain, a half RING-finger domain 364 413 IPR002867 GO:0008270
Glsi03g0138 519 Pfam IBR domain, a half RING-finger domain 284 344 IPR002867 GO:0008270
Glsi03g0138 519 Pfam Reverse transcriptase-like 68 174 IPR002156 GO:0003676|GO:0004523
Glsi03g0138 519 FunFam RBR-type E3 ubiquitin transferase 201 285 - -
Glsi03g0138 519 SUPERFAMILY RING/U-box 357 421 - -
Glsi03g0138 519 ProSiteProfiles TRIAD supradomain profile. 201 419 IPR044066 -
Glsi03g0138 519 SUPERFAMILY RING/U-box 203 276 - -
Glsi03g0138 519 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 17 463 IPR031127 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g0138 Glsi-ChrGlsi03 2012205 2016463 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi03g0138 56 404 C3H Transcription Factor Family AT2G19610 25.070 1.27e-27 113