Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g0135 ATGGAAAGAGCTGGAGCTGGTGCTGGTGGCTCCAGAGGAAGAGGACCAGCACGAGTTCCCAAACCGGAAAGACTACAAGTATCAGAACAGCTAGGTCCAAGCTCGTCCTGTACCCCAGATAAGAAAGACAAAATTTTACCAGTTCACAGACCTGACAAGGGCGGCAAATTAGCAATTCAAACTTGCCGGCTTCGTGTCAATCATTTTCCTGTCAAGGTCAATCCTATGGGTATAATCATGCATTACAATGTGGAAGTGAAACCCCAGTTACCCCAGAAACATGGTAGACCTCAGAAAATACCAGAGTCAGACCTGTCCATGATTAGAGAGAGATTGTTTTCTGATGATCCCAAGAGACTACCATTGGGAAAGACTGCATATGACGGAGGAAAGAACATTTTTACTGCAGTTCCGGTGCCAGAAGAAACCTTCACAGTCAATATCTTTAAAGGAGAGGATGAAGGAAGCAGCTCATATGACGTTACCTTGACACTTGTTAATAAACTCAAGCTTCACGAGTTAAAGGAGTACTTCAGTGGGGAGGTTTCCTCAATTCCGAGAGATGTTTTACAAGGATTGGATTTGGTGGAGAAGGAGAATCCAGCTAGGTGTACAATTTCTTTTGGACAAAACTTTTATCCCACAAGTCCTCAGTTGTTACATAAGGATCTTCAACGCCGCATAATTGCAATACGAGGGTTTCAACATAGTCTAAAACCCACATCTCAGGGACTGTCCTTATGTCTGGATTACTCTGTTTTGTTTATCTGGAACCAAATGTCAGTCTTGAATTTTCTGCATGAACATATTAATGGTTTTAGGTTGAATGAATTTGAGAAGTTCAAGGAACATGTTAAGCAAGCACTGATCGGGTTGAAAGTCAATGTGACGCACCACGAAAACAAACAGAAACACACTATTACAAGGTTAACAGATAAAACTACAAGGGATCTCACTTTCCCGGTTGTGGACCGAAAGGGCCGGTTCCCCCCACAAAACATTGGAGTTCTTAGCTATTTTAAAGAGAAATACGGCAAGGAAATTGTACATAAAGATATTCCTTGCTTGGATTTTGGGACAGGCAGGAAAATGCATTATGTACCTATGGAGTTCTGCATCTTAGTTGAGGGTCAAAGATATCCCAAGGAGTATTTGGGCTATGATCCTGTCAAGACGTTGAACAATATTTCATTGGCTCGTCCGAAGGAGAGGGAGAGTGTAATACAGAAGATGGTGCAGTCAAGAGATGGACCCTGCGGTGGTGGTATTACGCAAAGTTTTGGGATAAATGTCGACACAAACATGACGACCGTGGAAGGACGCATCATCGGGCCACCAAAATTGAGGTTAGGTGACCCAAATGGCAAGACTATGTCCATTGCACTGGACCCAGAGAAATGTCAATGGAATCTGCTTGGAAAATCAATGGTAGAAGGCAAGCCAGTTGAGCGATGGGCCATTCTTGATTTCACCAGCGGTGGGCGATTTCGACTGCGAGTTGAGGATTTTGTTCATAACCTTATCGGTAAGTACAGAAAATTGGGTATTGACATGAAGGAGCCTGTTTGGTATGAACGTACTTCAATGAACCAACTTGCAAATTATGATTCGCTATGTCAATTACTGGAAAAAGTTAACGATAGAGGTTATAAAAAAGGTCAAGGCCCACTGCAATTTATTCTGTGTGTAATGACTTCCAAAGATCCAGGGTACAAGACTCTGAAGTGGATTTCTGAGACCAAAGTTGGTATAGTGACACAGTGCTGCTTGTCTGATAATGCTAATGAAGGGAAGGACCAGTATCTTACTAACCTTGCTCTCAAGATCAATGCCAAACTTGGAGGCAGTAATGTGGAACTCAGTAATAGGCTCCCTCACTTTGAGGATGAAGGGCATGTTATGTTTATAGGGGCTGATGTCAATCATCCAGCTAATAATCCATCAATTGCTGCTGTGGTTGCAACTGTTAACTGGCCTGCTGCTAATCGCTATGCAGCACGTGTTTGCTCTCAGTATCATCGAAAAGGGAAAATATTGAACTTTGGAGAAGTTTGCCTTGAGCTTGTTGGATGTTATGAAAGGTTGAACAAAGTCAGGCCAGGAAAAATTGTTATTTTTCGAGATGGGGTGTGTGAGGGCCAATTTGACATGGTTCTTAATGAAGAGCTGCAAGATTTGAAAAGAGCATTCCAATGCTCAAATTACTTCCCAACCATCACTCTCATTGTAGCTCAGAGGCGACATCAGACTCGATTATTTCTAGATGGGGCTTGTAATGGAAATGTGCTTCCTGGAACAGTTGTGGACACAAAAATCATACACCCTTTTGAGTTTGACTTTTACCTTTGTAGTCACTATGGAAGCTCAGGTACCAGCATACCTACTCACTATCATGTCTTGTGGGATGAGCACAGGTTTACATCTGATGATTTACAGAAAATCATATATGATATGTGCTTTACCTTTGCAAGGTGCACTAAGCCTGTTTCCTTAGTCCCTCCTGTGTACTATGCTCGCCTTGCTACCCGTAGAGGACGTTTATACCATGAAGCAAGGATTGGGGTGCAATCTCCAGATTCAGCTTCTTCTTCTTCGTCTCTGGCTTCCTCATCACTCTCATCAACTGCTTCAATTGAACAGGGGTTTTACAGGTTGCATGCTGACCTGGAAAACATGATGTTCTTCATCTAA 2691 0.4266 MERAGAGAGGSRGRGPARVPKPERLQVSEQLGPSSSCTPDKKDKILPVHRPDKGGKLAIQTCRLRVNHFPVKVNPMGIIMHYNVEVKPQLPQKHGRPQKIPESDLSMIRERLFSDDPKRLPLGKTAYDGGKNIFTAVPVPEETFTVNIFKGEDEGSSSYDVTLTLVNKLKLHELKEYFSGEVSSIPRDVLQGLDLVEKENPARCTISFGQNFYPTSPQLLHKDLQRRIIAIRGFQHSLKPTSQGLSLCLDYSVLFIWNQMSVLNFLHEHINGFRLNEFEKFKEHVKQALIGLKVNVTHHENKQKHTITRLTDKTTRDLTFPVVDRKGRFPPQNIGVLSYFKEKYGKEIVHKDIPCLDFGTGRKMHYVPMEFCILVEGQRYPKEYLGYDPVKTLNNISLARPKERESVIQKMVQSRDGPCGGGITQSFGINVDTNMTTVEGRIIGPPKLRLGDPNGKTMSIALDPEKCQWNLLGKSMVEGKPVERWAILDFTSGGRFRLRVEDFVHNLIGKYRKLGIDMKEPVWYERTSMNQLANYDSLCQLLEKVNDRGYKKGQGPLQFILCVMTSKDPGYKTLKWISETKVGIVTQCCLSDNANEGKDQYLTNLALKINAKLGGSNVELSNRLPHFEDEGHVMFIGADVNHPANNPSIAAVVATVNWPAANRYAARVCSQYHRKGKILNFGEVCLELVGCYERLNKVRPGKIVIFRDGVCEGQFDMVLNEELQDLKRAFQCSNYFPTITLIVAQRRHQTRLFLDGACNGNVLPGTVVDTKIIHPFEFDFYLCSHYGSSGTSIPTHYHVLWDEHRFTSDDLQKIIYDMCFTFARCTKPVSLVPPVYYARLATRRGRLYHEARIGVQSPDSASSSSSLASSSLSSTASIEQGFYRLHADLENMMFFI 896
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g0135 896 MobiDBLite consensus disorder prediction 1 52 - -
Glsi03g0135 896 Pfam Argonaute linker 2 domain 403 449 IPR032472 -
Glsi03g0135 896 Gene3D paz domain 255 380 - -
Glsi03g0135 896 Pfam N-terminal domain of argonaute 61 196 IPR032474 -
Glsi03g0135 896 ProSiteProfiles Piwi domain profile. 559 850 IPR003165 GO:0003676
Glsi03g0135 896 SMART Piwi_a_2 559 849 IPR003165 GO:0003676
Glsi03g0135 896 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 60 851 - -
Glsi03g0135 896 ProSiteProfiles PAZ domain profile. 260 376 IPR003100 GO:0005515
Glsi03g0135 896 Pfam Argonaute linker 1 domain 209 257 IPR014811 -
Glsi03g0135 896 CDD Piwi_ago-like 427 848 IPR045246 -
Glsi03g0135 896 Pfam Piwi domain 559 846 IPR003165 GO:0003676
Glsi03g0135 896 SUPERFAMILY Ribonuclease H-like 554 850 IPR012337 -
Glsi03g0135 896 SUPERFAMILY PAZ domain 256 414 IPR036085 GO:0005515
Glsi03g0135 896 Gene3D - 442 622 - -
Glsi03g0135 896 SMART PAZ_2_a_3 260 390 IPR003100 GO:0005515
Glsi03g0135 896 CDD PAZ_argonaute_like 260 375 - -
Glsi03g0135 896 SMART DUF1785_2 206 259 IPR014811 -
Glsi03g0135 896 Gene3D - 629 896 IPR036397 GO:0003676
Glsi03g0135 896 FunFam Protein argonaute 7 254 380 - -
Glsi03g0135 896 Pfam PAZ domain 279 384 IPR003100 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g0135 Glsi-ChrGlsi03 1984259 1989400 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi03g0135 16 873 Eukaryotic Initiation Factors Gene Family AT1G48410 36.265 1.11e-152 474