Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g0133 ATGGAAAGAGGCGGTGCCGGTGGCTACAGAGGAAGAGGAAGAGGACCACCGCGAGGTGAGCGTGGTGGAAGAGGGTTTCATCACCAACATGAAGGGGGCCGATCGGGGCCATGGACGAACCCAAATTATGCTGCTGCCGCGCCGGGACCACGGTCTGGTGAAGAGACGAGAAGGGGTGGTTATGGTAGAGGAAGAGGCGAATCTGAAAGAGGCCGGTCAGGTCCGTGGAACCGACATTACGCTGCTGGTCAGGGACAATGGTCTGGTTCTGGTGAAGAGGCGAGGACGGGTGGTTATGGTCGAGGAGGAGGTGAACCTGAAAGGGGCCGATCAGGGCCATGGAACCAGAGTTATGCTGCGGTTTCGGAATCTAGTACTGGTGAGGAGACGAGGAGGGGTGGTTATGGTAGAGGCGGAGCTGAAAGAGGGGGTAGAGAAGGAGGAAGAGGGAGACGAGGTGGCAGAGATGGGGGTACTGGTGGACCTCAATATCGGGTAGTAACCAATCAACCTGTTCCAGTTCCCGAAATTCAAAGATTACAAATATCAGAACAGTTAGGTTCAACTTCGTCCAGTACCCCGGACATGAAAGAGAAAATTCTACCAGTTCACAGACCTGACAAGGGTGGCAGATTAGCAATTCGAACTAGCAGGCTTCGCGTCAATCATTTTCCTGTCAAGTTCAATCCTAATAGTATAATCATGCATTACAATGTTGAAGCCAAGCCCACGTTACCCCAGAGACATGGTCGACCTCAGAGAATCTCAAAGGGTGAACTCTCCATGATCAGAGAGAAATTGTTTTCTGATGATCCTGAGAGATTACCATTGGGAAAGACTGCATATGACGGAGAAAAAAACATATTTAGTGCAGTTCCGTTGCCAGAAGAAAGCTTCACAGTGGATATCTCTCAAGGAGAGGATGAAGGAATCAGGTCATATAACGTTACCTTGACACTCGTTAATAAACTCGAGCTTCGCAAATTAAAGGAGTATCTCAGTGGGGAAGTCTTTTCAATTCCGAGAGATATTTTACAAGGGATGGATTTGGTAGTGAAGGAGAATCCGGCTAGGAATACTATTTCTTTGGGACGGAACTTCTATCCGACAAATCCTCCTTTGTTACACAGGGATCTTGAACCTGGTATAATTGCAATAGGAGGGTTTCAACATAGTCTAAAGCCCACATCTCAGGGGCTGTCTTTATGTCTGGACTACTCCGTTTTGTCTTTCCGAAAGCCAATGTCAGTCTTGGATTTTTTGCACGAGCGTATCAATGGTTTTAAGTTGCATGAATTTCAGAAGTTCAAGGAACATGTTAAGGAGGAACTGGTTGGGTTGAAAGTTAATGTGACACATCGCAGAACCAAACAGAAATACACTATTCAAAGGTTAACACATGAAATTACAAGGAATCTCACTTTCCCTCTTGAGGACCCGGAGGGCCAGTCCCCCCCACAACAAATTAGAGTTCTTAGCTATTTTAATGAGAAATACGGCAAGGATATTGTACATAAAGATATTCCTTGCTTGGATTTTGGGACAGGCAGGAAAATACATTATGTACCTATGGAGTTCTGCATCTTAGTTGAGGGTCAAAGATATCCCAAGGAGTATTTGGGCAAAGATCCTGCCAAGACGTTGAAAAATATGTCATTAGCTCGTCCGAAGGAGAGGGAGAGTGTGATACAGAAGATGGTGCAGTCAAGAGATGGACCTTGCGGCGGTGGTATTATGCAAAATTTTGGAATGAATGTCAACACAACCATGACAACTGTGGAGGGACGTATCATCGGACCACCAAGATTGAAGTTAGGTGACCCAAATGGCAGGATCATGCCCATAACACTGGATCCAGAGAAATGTCAATGGAATCTGCTTGGAAAATCAATGGTAGAAGGCAAGCCAGTTGAGCGATGGGCCATTCTTGATTTCACCGGCAGCGGGCGATTTCGACTGCGAGTTGAGGATTTTGTTCCTAACCTTATCGGTAAGTACAGAAAATTGGGTATTGAGATGAAGGAGCCTGTTTGGTATGAACGTACTTCAATGAACCAACTTGCAAATTATGATTCGCTATGTCAATTACTGGAAAAAGTTAATGATAGAGGTTATAAAAAAGGTCAAGGCCCGCTGCAATTTATTCTGTGTGTAATGACTCTCAAAGATCCAGGGTACAAGACTCTCAAGTGGATTTCTGAGACCAAAGTTGGTATAGTGACACAGTGCTGCTTGTCTGGTAATGTTAACGAAGGGAAGGACCAGAATCTTACCAACCTTGCTCTTAAGATCAATGCCAAACTTGGTGGCAGTAATGTGGAGCTCAGTAGTAGGCTCCCTCACTTTGAGGATGAAGGGCATGTTATGTTTATAGGGGCTGATGTCAATCATCCAGCTGCCCGTGACACCAATAGTCCATCAATTGCTGCTGTGGTAGCAACTGTTAACTGGCCTGCTGCTAATCGCTATGCAGCACGTGTTTGCTCTCAGTACCATCGGAAAGAGAAAATATTGAACTTTGGAGAAGTTTGCCTTGAGCTCGTTGGACGTTATGAAAGTTTGAACAAAGTCAGGCCAGGAAAAATTGTTGTTTTTCGAGATGGGGTGAGTGAGGGGCAATTTGACATGGTTCTTAATGAAGAGCTGCAAGATTTGAAAAGAGCATTCCAATGCTCAAATTACTTCCCAACCATCACTCTCATTGTAGCTCAGAAGCGACACCAGACTCGATTATTTCTGGATGGGAATTATAATGGAAATGTGCTTCCTGGAACAGTTGTGGACACAAAAATCATACACCCTTTTGAGTTTGACTTTTACCTTTGTAGTCACTATGGAAGCTTAGGTACCAGCAAGCCTACTCACTATCATGTCTTATGGGATGAGCACGGGTTTACGTCTGATGATTTACAGAAACTCATATATGATATGTGCTTTACCTTTGCAAGGTGCACTAAACCTGTTTCCTTAGTCCCTCCTGTGTACTATGCTGACCTGGCTGCCTACAGAGGACGATTATACCATGAAGCAAGGATTGCGATGCAATCTCCATATTCAGCAGCATCTTCTTCTTCTTCGTCTCTGGCTTCTTCATCCCTCTCATCAACCGCATCAATTGAACAGGGACCTTACAGGTTGCATGCTGACCTAGAAAACATGATGTTCTTCATCTAA 3174 0.4505 MERGGAGGYRGRGRGPPRGERGGRGFHHQHEGGRSGPWTNPNYAAAAPGPRSGEETRRGGYGRGRGESERGRSGPWNRHYAAGQGQWSGSGEEARTGGYGRGGGEPERGRSGPWNQSYAAVSESSTGEETRRGGYGRGGAERGGREGGRGRRGGRDGGTGGPQYRVVTNQPVPVPEIQRLQISEQLGSTSSSTPDMKEKILPVHRPDKGGRLAIRTSRLRVNHFPVKFNPNSIIMHYNVEAKPTLPQRHGRPQRISKGELSMIREKLFSDDPERLPLGKTAYDGEKNIFSAVPLPEESFTVDISQGEDEGIRSYNVTLTLVNKLELRKLKEYLSGEVFSIPRDILQGMDLVVKENPARNTISLGRNFYPTNPPLLHRDLEPGIIAIGGFQHSLKPTSQGLSLCLDYSVLSFRKPMSVLDFLHERINGFKLHEFQKFKEHVKEELVGLKVNVTHRRTKQKYTIQRLTHEITRNLTFPLEDPEGQSPPQQIRVLSYFNEKYGKDIVHKDIPCLDFGTGRKIHYVPMEFCILVEGQRYPKEYLGKDPAKTLKNMSLARPKERESVIQKMVQSRDGPCGGGIMQNFGMNVNTTMTTVEGRIIGPPRLKLGDPNGRIMPITLDPEKCQWNLLGKSMVEGKPVERWAILDFTGSGRFRLRVEDFVPNLIGKYRKLGIEMKEPVWYERTSMNQLANYDSLCQLLEKVNDRGYKKGQGPLQFILCVMTLKDPGYKTLKWISETKVGIVTQCCLSGNVNEGKDQNLTNLALKINAKLGGSNVELSSRLPHFEDEGHVMFIGADVNHPAARDTNSPSIAAVVATVNWPAANRYAARVCSQYHRKEKILNFGEVCLELVGRYESLNKVRPGKIVVFRDGVSEGQFDMVLNEELQDLKRAFQCSNYFPTITLIVAQKRHQTRLFLDGNYNGNVLPGTVVDTKIIHPFEFDFYLCSHYGSLGTSKPTHYHVLWDEHGFTSDDLQKLIYDMCFTFARCTKPVSLVPPVYYADLAAYRGRLYHEARIAMQSPYSAASSSSSSLASSSLSSTASIEQGPYRLHADLENMMFFI 1057
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g0133 1057 MobiDBLite consensus disorder prediction 134 153 - -
Glsi03g0133 1057 MobiDBLite consensus disorder prediction 56 74 - -
Glsi03g0133 1057 MobiDBLite consensus disorder prediction 14 31 - -
Glsi03g0133 1057 Pfam N-terminal domain of argonaute 217 351 IPR032474 -
Glsi03g0133 1057 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 216 1010 - -
Glsi03g0133 1057 SMART PAZ_2_a_3 415 553 IPR003100 GO:0005515
Glsi03g0133 1057 CDD PAZ_argonaute_like 414 530 - -
Glsi03g0133 1057 SUPERFAMILY Ribonuclease H-like 709 1009 IPR012337 -
Glsi03g0133 1057 SMART Piwi_a_2 714 1008 IPR003165 GO:0003676
Glsi03g0133 1057 Pfam Argonaute linker 1 domain 363 413 IPR014811 -
Glsi03g0133 1057 CDD Piwi_ago-like 578 1007 IPR045246 -
Glsi03g0133 1057 MobiDBLite consensus disorder prediction 1 166 - -
Glsi03g0133 1057 Gene3D paz domain 410 535 - -
Glsi03g0133 1057 Gene3D - 784 1057 IPR036397 GO:0003676
Glsi03g0133 1057 MobiDBLite consensus disorder prediction 115 129 - -
Glsi03g0133 1057 Pfam PAZ domain 429 540 IPR003100 GO:0005515
Glsi03g0133 1057 SUPERFAMILY PAZ domain 411 569 IPR036085 GO:0005515
Glsi03g0133 1057 FunFam Protein argonaute 7 409 535 - -
Glsi03g0133 1057 SMART DUF1785_2 361 414 IPR014811 -
Glsi03g0133 1057 Gene3D - 597 777 - -
Glsi03g0133 1057 ProSiteProfiles PAZ domain profile. 415 531 IPR003100 GO:0005515
Glsi03g0133 1057 Pfam Piwi domain 715 1005 IPR003165 GO:0003676
Glsi03g0133 1057 ProSiteProfiles Piwi domain profile. 714 1009 IPR003165 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g0133 Glsi-ChrGlsi03 1970501 1974922 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi03g0133 161 1034 Eukaryotic Initiation Factors Gene Family AT1G48410 36.479 4.09e-155 486