Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g0132 ATGGCTCATTCATCAGAACCATCATCATCCTTGAGCTTTACATCATCTTCCCATATATCTAATGGCTCTATTTACCACAACATATGCTCTGATCCCGGACCTAACCTTGAAGTGATCAGTTTGAGCAAACTGAGCTCTAATTTGGAGCAGCTTTTGGTTGATTCTGATTTTGATTTTAGTGATGCTGACATCATTGTTGAAGGAGTACCAGTTGGTGTTCATCGGTGTATTCTGGCCTCTAGGAGCAAGTTTTTCCATGAATTATTCAAGAGAGAGAAAGGATCTTCCGAGAAAGAAGGCAAATTAAAGTATTGCATGAGTGATTTGTTGCCATATGGCAAGGTTGGACACGAAGCCTTTCTCATATTCTTGGGTTATGTGTATACTGGCAAACTCAAGCCCTCTCCAATGGAGGTGTCAACTTGTGTTGACAATGTTTGTGTCCATGATGCTTGTAGACCAGCAATAAATTTTGCTGTGGAGTTGATGTACGCCTCTTCCATTTTTCAAGTACCAGAGTTAGTGTCACTTTTCCAGCGACGCCTTCTTAATTTTGTAGAAAAGGCTCTTGTGGAAGATGTCATCCCAATACTCACTGTTGCTTTCCATTGTCAATTGAGTCAACTTGTCACTCAATGTGTTGATAGGGTGGCACGATCTGACCTTGACCACATCTCAATTGAGAAAGAGCTCCCTGCAGAACTCTCAGGAAAAGTTAAACTGCTTCGCGGCAACTCCCAGCATGATGTTGAAAATGATGATTTAGTAGTTGATGATCCATTGCGTCAAAAGAGAATCACTAGAATACACAAGGCATTAGACTCAGATGATGTCGAGCTTGTCAAACTACTTTTAACTGAGTCTGATATAACATTAGATGAAGCCAATGCTCTCCATTATGCTGCAGCCTACTGTGATCCCAAGGTTGTTTCTGAGGTTCTTGGTTTGGGACTGGCTGATGTCAATCTTCGGAATTCTCATGGCTACACTGTGCTTCACATTGCTGCCATGCGTAAGGAGCCTTCGATCATAGTATCCCTTCTCGACAAAGGGGCTTGTGCATCCGATTTGACTACAGATGGTCGGAGTGCTGTTAGTATCTGCAGGAGGTTGACAAGACCAAAGGACTATCATGCGAAAACAGAACATGGAAAGGAAACAAACAAAGATCGAATATGCATTGATGTTCTTGAAAGACAAATGTGGAGTAATCCCATGGCTGTGGATGCCTCCATGTCTTCCCAAACAATGGCTGATGATCTGCACATGAAGCTGCTATACCTTGAGAACAGAGTGGCATTTGCAAGACTATTCTTCCCAACAGAAGCGAAGCTAGCCATGGAGATTGCACATGCTGAGACAACATCTGAGTTTGCAGGTCTTTGTGCATCAAAAGGTTCAAATGGGAATTTGAGGGAGGTTGATCTAAATGAGACTCCTATAGTGCAAAACAAAAGACTTCTTTCGCGGATGGAGGCCCTTGCGAAAACAGTGGACATGGGCAGACGGTATTTTCCTCATTGCTCGGAAGTGCTGGACAAGTTCATGGAGGATGACCTGCCTGATCTGTTTTACCTGGAGAAGGGCTCCCAAGATGAGCAAAGAATCAAGAGGACGCGATTCATGGAGCTCAAAGATGACGTTCAAAAGGCTTTCAACAAGGACAAAGCCGAGTTTACCCGGTCCGGGATCACCCGATCCGGGATTACCCGTTCCGGGATTTCGACTTCTTCATCATCATCAACTCCAAAAGGCTCTGTACATGTCAAGGTTAGAAAAGTGTGA 1785 0.437 MAHSSEPSSSLSFTSSSHISNGSIYHNICSDPGPNLEVISLSKLSSNLEQLLVDSDFDFSDADIIVEGVPVGVHRCILASRSKFFHELFKREKGSSEKEGKLKYCMSDLLPYGKVGHEAFLIFLGYVYTGKLKPSPMEVSTCVDNVCVHDACRPAINFAVELMYASSIFQVPELVSLFQRRLLNFVEKALVEDVIPILTVAFHCQLSQLVTQCVDRVARSDLDHISIEKELPAELSGKVKLLRGNSQHDVENDDLVVDDPLRQKRITRIHKALDSDDVELVKLLLTESDITLDEANALHYAAAYCDPKVVSEVLGLGLADVNLRNSHGYTVLHIAAMRKEPSIIVSLLDKGACASDLTTDGRSAVSICRRLTRPKDYHAKTEHGKETNKDRICIDVLERQMWSNPMAVDASMSSQTMADDLHMKLLYLENRVAFARLFFPTEAKLAMEIAHAETTSEFAGLCASKGSNGNLREVDLNETPIVQNKRLLSRMEALAKTVDMGRRYFPHCSEVLDKFMEDDLPDLFYLEKGSQDEQRIKRTRFMELKDDVQKAFNKDKAEFTRSGITRSGITRSGISTSSSSSTPKGSVHVKVRKV 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g0132 594 SMART BTB_4 60 186 IPR000210 GO:0005515
Glsi03g0132 594 Gene3D - 261 401 IPR036770 -
Glsi03g0132 594 SUPERFAMILY POZ domain 46 184 IPR011333 -
Glsi03g0132 594 MobiDBLite consensus disorder prediction 568 594 - -
Glsi03g0132 594 ProSiteProfiles Ankyrin repeat profile. 327 352 IPR002110 GO:0005515
Glsi03g0132 594 SMART ANK_2a 327 359 IPR002110 GO:0005515
Glsi03g0132 594 SMART ANK_2a 293 323 IPR002110 GO:0005515
Glsi03g0132 594 SMART ANK_2a 264 292 IPR002110 GO:0005515
Glsi03g0132 594 Pfam Ankyrin repeats (3 copies) 270 352 IPR002110 GO:0005515
Glsi03g0132 594 CDD BTB_POZ_NPR_plant 43 186 - -
Glsi03g0132 594 ProSiteProfiles Ankyrin repeat region circular profile. 327 352 - -
Glsi03g0132 594 ProSiteProfiles BTB domain profile. 60 136 IPR000210 GO:0005515
Glsi03g0132 594 SUPERFAMILY Ankyrin repeat 265 370 IPR036770 -
Glsi03g0132 594 FunFam Regulatory protein NPR3 34 218 - -
Glsi03g0132 594 Pfam NPR1/NIM1 like defence protein C terminal 369 567 IPR021094 -
Glsi03g0132 594 Pfam BTB/POZ domain 58 146 IPR000210 GO:0005515
Glsi03g0132 594 FunFam regulatory protein NPR3-like 261 401 - -
Glsi03g0132 594 Gene3D Potassium Channel Kv1.1; Chain A 35 218 IPR011333 -
Glsi03g0132 594 PANTHER REGULATORY PROTEIN NPR3 10 579 IPR044292 GO:0009862|GO:2000022|GO:2000031
Glsi03g0132 594 MobiDBLite consensus disorder prediction 568 586 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g0132 Glsi-ChrGlsi03 1962064 1967341 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Glsi03g0132 NPR1_like_C 1.2e-91 No_clan