Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g0115 ATGGTCACCGGCTTACGCAAGCTCAAGCACTCCCTCTCCAACCTCTTCTCTCCCACCAAATCCGATTCATCTTCTCAGCCTCTTCCCCCCGCTGCCTTTTCCGATTCCGGCAACCCTCCGTTGCCGCCCACTCGCCGCTCCCTCTCCAATGCCGACCGCTCCTTCTCCTCCCACTTGTCTCGCTCCACCTCCTCATTCTCCCGACTCTCTCGTGCCTTCAGCATTCGATCCTCCAAGAAGACTTGCACCATTTGCTTGGGTGACTTGAAAATAGGGCAAGGCCGAGCTATCTTTGTTGCTGAGTGTTCCCACTCTTTCCATTTCAATTGTATTGCTTCCAATGTCAAGCATGGAAGCCACGTCTGTCCCGTCTGTCGCTCCAAATGGAAAGAAATACCATCTCAAGCTCCAACCAGTGCTCTTGGTACTCATCAACATAGGGGAAGGGTCAGAGCATCACCTACTTCCCCACCTCCCTTATTACAGTCCTTCCCCAACCGTGAGCCTCGTCAATTCTCTGATGATGAGCCACTCCTCCCAGCAATTTCCACAGATCATGCTTCATCTGTACCTAATATCGTAGCTGTCAAGTCCTTTACAGAATATCCTGTTCTCTCTGCATCTGAAGCCCATACAGAATTTGCAGTTCTTGCCAGCATCCGTGCGCCAGCACTTTCTCAACGTGATCGTGCGCCTGTCGACCTTGTTACAGTTCTTGACATCAGTGGCAGCATGGCTGGTCCAAAGCTTTCACTACTCAAGCATGCTGTTCATTTTGTCGTTCAGAACTTGGGTGCATCTGACCGACTTTCTATAGTTGTTTTCTCCTCAACAGCTCTGAGAATTTTTCCACTACGAAGGATGACTGACGGTGGCAGAGCTGATGCAGCCCGTGTCGTCAATTCTCTTTCGACAAATGGAGGAACAAACATTTTGAATGGGCTTAGGAAAGGAGTACGTGTCCTTGATGAACGACGAGAGCGAAACCCAGTTGCTAGTATTATACTCCTTTCTGATGGCAGGGTTTCCCCTACAAGAGAGTCTTCGGGATATCTGAGCCAATTACCTGCTTCAATCAGCTCTAATAAAAATGGGGATTCAGCCTCACAGCCAACTATTCCTGTCCACACATTTGGGTTTGGTACAGATCACGATTCCGCTGCTTTGCATGTTATATCCGATGCAGCCGGTGGCACATTTTCCTTTATTGAGTCTGTTGGCATGGTACAAAATGCCTTTGCTAGGTGCATTGGCGGTCTTCTAAGTGTTGTGTCTCGAGAGCTACAACTCACGGTCAAGGCATCAACACCAGGGGTGCAAATTAGTTCAATACGCTCAGGGAGATACATCAGTGAAATTGGTGACGAGGGTAAGCTATGTGTCATTGATGTTGGTAACTTGTATGCAGAAGAGGAGAAGGGATTTCTGTTGTACCTATCAATTCCAGCTACCCCAGCCAGTGAAGGAGATGAAATGAAGGCAAAGACTTCTTTGCTAGATATCACGTGCCAATACAAAGATTCAGCATCTGAGGAGCTAGTTAAGATTGAGGGTGAAAGAGTAGAGATACAGAGATCACATGTTTTACCACCGCCTACCGACATGATAGTGTCCTTGGAAGTTGATAGACATCGAAATCGAATTTTGGTGGCTGATGGTATAGCAGAAGCACAACGGCTGGCCGAGAGGGGAGACTTAGAGTGTGCAAAAGCTTTGCTGGAAGCAAAAAGATCAATCCTGTTATCCTCAGCTTCAGCCTCTGCAGGAGATGCTACCTGCACTTGGCTTGAAGCTGAACTGAGAGAAACTAGGGAGAGGATGGAAAGCAGGGAAGAATATGAACATACTGGAAGGGCTTATGTTCTCTCAGGATTGAGCTCCCACTCATGGCAGAGGTCTACAACAAGGGGAGACTCTTTAACCCAGACATTTGTCGTCGGTGGAGAAGGCAGAGAACCAGCTGCAAGTGGAGCAGTAGGGTATGACACGCCTTCAATGGTAAGCATGGTGAGAATGTCGCAGAATCTTAACCCAGCATTGCATTTCCCACCAGCCTGA 2058 0.4835 MVTGLRKLKHSLSNLFSPTKSDSSSQPLPPAAFSDSGNPPLPPTRRSLSNADRSFSSHLSRSTSSFSRLSRAFSIRSSKKTCTICLGDLKIGQGRAIFVAECSHSFHFNCIASNVKHGSHVCPVCRSKWKEIPSQAPTSALGTHQHRGRVRASPTSPPPLLQSFPNREPRQFSDDEPLLPAISTDHASSVPNIVAVKSFTEYPVLSASEAHTEFAVLASIRAPALSQRDRAPVDLVTVLDISGSMAGPKLSLLKHAVHFVVQNLGASDRLSIVVFSSTALRIFPLRRMTDGGRADAARVVNSLSTNGGTNILNGLRKGVRVLDERRERNPVASIILLSDGRVSPTRESSGYLSQLPASISSNKNGDSASQPTIPVHTFGFGTDHDSAALHVISDAAGGTFSFIESVGMVQNAFARCIGGLLSVVSRELQLTVKASTPGVQISSIRSGRYISEIGDEGKLCVIDVGNLYAEEEKGFLLYLSIPATPASEGDEMKAKTSLLDITCQYKDSASEELVKIEGERVEIQRSHVLPPPTDMIVSLEVDRHRNRILVADGIAEAQRLAERGDLECAKALLEAKRSILLSSASASAGDATCTWLEAELRETRERMESREEYEHTGRAYVLSGLSSHSWQRSTTRGDSLTQTFVVGGEGREPAASGAVGYDTPSMVSMVRMSQNLNPALHFPPA 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g0115 685 MobiDBLite consensus disorder prediction 14 58 - -
Glsi03g0115 685 SMART VWA_4 232 415 IPR002035 -
Glsi03g0115 685 MobiDBLite consensus disorder prediction 40 58 - -
Glsi03g0115 685 Pfam VWA / Hh protein intein-like 590 674 IPR032838 -
Glsi03g0115 685 Pfam RING-like zinc finger 82 111 IPR001841 -
Glsi03g0115 685 CDD RING-H2_WAVH2 76 131 - -
Glsi03g0115 685 ProSiteProfiles VWFA domain profile. 234 424 IPR002035 -
Glsi03g0115 685 MobiDBLite consensus disorder prediction 136 169 - -
Glsi03g0115 685 PANTHER CALCIUM-ACTIVATED CHLORIDE CHANNEL REGULATOR 80 673 - -
Glsi03g0115 685 Pfam von Willebrand factor type A domain 234 410 IPR002035 -
Glsi03g0115 685 Gene3D von Willebrand factor, type A domain 234 418 IPR036465 -
Glsi03g0115 685 MobiDBLite consensus disorder prediction 14 32 - -
Glsi03g0115 685 SMART ring_2 82 125 IPR001841 -
Glsi03g0115 685 ProSiteProfiles Zinc finger RING-type profile. 82 126 IPR001841 -
Glsi03g0115 685 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 72 140 IPR013083 -
Glsi03g0115 685 SUPERFAMILY vWA-like 230 417 IPR036465 -
Glsi03g0115 685 SUPERFAMILY RING/U-box 78 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g0115 Glsi-ChrGlsi03 1595551 1598816 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi03g0115 75 131 C3H Transcription Factor Family AT1G74410 38.983 6.90e-06 46.2