Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g0107 ATGTTGGGTGGGCTATATGGAGACCTCCCTCCACCCTCTTCTGCCGAAGAAGAGAAACCCAGCAATACCAATGTATGGTCAAGCAGCACCAAGATGGCGCCAGCCACCCTGCGCAAGCCGGCATCGGTTTTCGCACCTCCACAGACGGTTCTGAGAACTCAGAGCAAGCCCAAAACTGTTAATTCTTCGGTACCCAAAGCAGTGGCATCAACGCCGGCTGCAGCACCGTCACCAGTGGTTCCCGATGATGCGGCGCAACCAGCTCTTGTGGGTGTCCAATCGACGGTGATAGAGGAGTATGACCCAGCTAGGCCGAATGACTACGAGGAGTATCGGAGGGAGAAGAAGAGGAAGGCTAGGGAGGCGGAGATGATGAAGGAGCTTGAGAGGAGACGGCGGGAAGAGGAAGAGAAGGAGAGGAGGGAGAGAGAGGAGTTAGAGAAGGAAAGAGACAGGGAGTATGGGGATTCACGATTGAATATTTCTGGGGAGGAGGCATGGAGAAGGCGTGCGGCAATGAGTGGGGCAGTGCCGAGGTCTCCATCTCCTCCCAGCAATGCAGATGGCTTTACTATTGGTAAGTCAGAAACAGGTGGGTTGGGCCTTGGCGCAGGTGGGCAAATGACTGCAGCTCAAAGAATGATGGCAAAGATGGGATGGAAGGAGGGACAAGGGCTTGGTAAGCAGGAGCAAGGAATTACCACTCCATTGATGGCCAAGAAAACAGATAGACGAGCTGGAGTTATTGTTAATGCTAGTGACACTAAGCCGGAAAAGAAAGTAAAGAGCGTGAATTTCAACGGACCACCTACACGGGTGCTGCTGCTTAGGAACATGGTGGGTCCTGGTGAGGTAGATGATGAGCTGGAAGATGAGGTAGGATCAGAATGTGCCAAGTATGGGACAGTAACTCGGGTTCTGATATTTGAGATAACTGAGCCAAATTTCCCTGTTGACGAGGCAGTCAGAATCTTCGTGCAATTTGAGAGGTCTGAAGAAACGACTAAAGCCATTATTGACCTTGATGGTCGGTTCTTCGGAGGTAGAGTGGTGCGAGCCTCATTTTATGATGAAGAGAGATTCAGTAAGAATGAATTGGCTCCAATGCCAGGAGAAATTCCTGGCTTTTTCTGA 1134 0.5115 MLGGLYGDLPPPSSAEEEKPSNTNVWSSSTKMAPATLRKPASVFAPPQTVLRTQSKPKTVNSSVPKAVASTPAAAPSPVVPDDAAQPALVGVQSTVIEEYDPARPNDYEEYRREKKRKAREAEMMKELERRRREEEEKERREREELEKERDREYGDSRLNISGEEAWRRRAAMSGAVPRSPSPPSNADGFTIGKSETGGLGLGAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDRRAGVIVNASDTKPEKKVKSVNFNGPPTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEETTKAIIDLDGRFFGGRVVRASFYDEERFSKNELAPMPGEIPGFF 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g0107 377 MobiDBLite consensus disorder prediction 1 202 - -
Glsi03g0107 377 SMART G-patch_5 205 251 IPR000467 GO:0003676
Glsi03g0107 377 Pfam G-patch domain 210 249 IPR000467 GO:0003676
Glsi03g0107 377 SMART rrm2_1 273 354 IPR003954 GO:0003676
Glsi03g0107 377 MobiDBLite consensus disorder prediction 102 165 - -
Glsi03g0107 377 PIRSF SPF45 3 373 IPR040052 GO:0045292
Glsi03g0107 377 SUPERFAMILY RNA-binding domain, RBD 275 360 IPR035979 GO:0003676
Glsi03g0107 377 Gene3D - 268 366 IPR012677 -
Glsi03g0107 377 MobiDBLite consensus disorder prediction 47 68 - -
Glsi03g0107 377 Coils Coil 108 156 - -
Glsi03g0107 377 PANTHER SPLICING FACTOR 45 SPF45 1 368 IPR040052 GO:0045292
Glsi03g0107 377 MobiDBLite consensus disorder prediction 16 35 - -
Glsi03g0107 377 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 272 358 IPR000504 GO:0003723
Glsi03g0107 377 CDD RRM_UHM_SPF45 270 366 IPR034653 -
Glsi03g0107 377 ProSiteProfiles G-patch domain profile. 207 253 IPR000467 GO:0003676
Glsi03g0107 377 FunFam Putative splicing factor 45 271 357 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g0107 Glsi-ChrGlsi03 1518636 1522293 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi03g0107 213 248 C2H2 Transcription Factor Family AT5G26610 61.111 5.23e-07 48.9