Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g0104 ATGGGTGTTCTATTGGTGGGTTTTAATTTTATGGCTCTCTCTATGCACAAAGATTCACCCAACAAGCAGATGGACTCAAGCAAGTATGTAAGGTATACACCCGAGCAGGTGGAGGCTTTGGAGAGGGTGTATGCAGAATGCCCGAAGCCCAGTTCTTTGAGAAGACAGCAGCTCATTAGGGAGTGCCCCATACTGTCTAATATTGAACCCAAACAGATCAAAGTCTGGTTTCAGAATCGCAGATGCCGCGAAAAGCAGAGGAAGGAATCTTGCCGTCTGCAGACAGTAAATAGGAAGCTTACTGCCATGAATAAGTTGTTAATGGAAGAGAATGATCGTCTGCAGAAGCAGGTCTCACATTTGGTTTATGAAAATGGATACATGAGGCAACAGATACATACTGCATCTGCTACTACTACAGACAATAGCTGTGAGTCTGTGGTAATGAGTGGTCAGCAACAACAGCAAAACCCAACACCTCAGCATCCCCATAGGGATGCCAATAACCCAGCTGGTCTTCTCGCAATAGCTGAGGAGACCCTGGCAGAGTTCCTTTCCAAGGCTACTGGAACTGCTGTCGACTGGGTCCAGATGATTGGGATGAAGCCTGGTCCGGATTCTATTGGAATCGTAGCTGTTTCCCGCAACTGTAGTGGAGTAGCAGCACGAGCTTGCGGCCTCGTGAGTCTAGAGCCCACGAAGGTTGCTGAGATTCTTAAAGATCGTCCATCATGGTATCATGACTGCCGCTGCCTTGATGTGTTGAGCATAGTCCCCACAGGGAATGGGGGAACAATAGAGCTCATGTACATGCAGACTTATGCACCTACGACATTGGCAGCAGCACGTGATTTCTGGACTCTAAGATACACTACAAATTTGGAAGATGGAAGTCTTGTGATATGTGAGAGGTCGTTAACTTCTGCAACCGGTGGCCCCACAGGGCCTCCTACTTCAAACTTCGTAAGAGCTGAAATGCTTCCTAGTGGTTATCTAATTAGACCCTGCGAGGGCGGTGGATCCATCATTAACATCGTTGATCATGTAGATCTAGATGTTTGGAGTGTTCCTGAAGTGCTCAGGCCCCTCTATGAATCATCAAAAATCCTGGCTCAGAAAATGACTATTGCTGCCTTGCGACATATAAGACAAATTGCACAAGAATCAAGTGGAGAAATTCAATATGGTGGGGGCCGCCAGCCTGCTGTTTTAAGGACATTTAGTCAGAAACTTTGCAGGGGGTTCAATGATGCTGTGAATGGGTTCGGGGATGATGGCTGGTCATTGATGGGTAATGATGGGGCAGAAGATGTGACCATAGCCATTAACTCGTCTCCTAACAAATTTTTTGGGTCCCATTACAATACCTCTATGTTCCCAGCATTTGGAGGAGGGGTGTTGTGTGCCAAGGCATCAATGCTGCTGCAGAATGTGCCTCCTGCTTTGCTTGTCCGTTTTCTGAGGGAGCATCGATCAGAGTGGGCGGATTATGGGGTTGATGCATACTCTGCTGCATGTCTCAAGGCTAGTCCTTATGGAGTTCCTTGTGCAAGGCCTGGTGGCTTCCCCAGCAGCCAGGTCATTTTACCGCTAGCTCCTACTATTGAAAACGAGGAGTTCTTGGAGGTAGTTCGGATAGAAGGTCATGCATTTTCTCCTGAAGATATGGCTCTGGCACGGGATATGTATCTACTGCAGCTGTGCAGTGGTATTGATGAAAATGCAATCGGGTCATGTGCCCAACTTGTGTTTGCACCTATTGATGAATCATTTGCTGATGATGCCATCTTGCTTCCTTCTGGCTTCCGCGTCATACCATTGGATCCTAAAACAAATGGTTCGGCAGCAACAAAGACATTGGACCTGGCATCTACACTTGAAGCTGGCTCTGCCAATGCCCGTCCACCTGGTGAAGCTGATTTGAACAATTACAACCTTAGGTCGGTCCTTACCATTGCATTTCAATTTATGTTTGAGAACCATTTGCGCGAGAATGTGGCTGCTATGGCTCGCCAGTATGTGCGGAGTGTTGTGGGGTCTGTTCAGAGGGTTGCCATGGCAATTGCTCCCTCTCGCCTCAGTCCCCAGCTGGGGCCAAAGTCTCTTCCTGGTTCTCCAGAGGCTCTTACTTTAGCTCGATGGATCTGTAGAAGCTACAGGACCCACACGGGGGGAGAGATTTTTCGTGTTGAGTCCACAGCAACTGATGCAATCTTGAAGCAACTTTGGCACCATTCGGATGCAATCATGTGCTGTTCTCTTAAAACTAATGCATCTCCAGTGTTTACCTTTGCAAACCAGGCTGGACTTGACATGCTCGAAACCACTCTTGTTGCACTTCAAGATATAATGCTTGATAAAGTTATTGATGAAGCTGGCAGGAAGATTCTCTGCTCTGAGTTCTCCAAGATAACGCAGCAGGGATATGCTTATCTTCCAGCAGGAATATGTGTTTCGAGTATGAATCGGCCCGTGTCATATGAGCAGGCCATAGCCTGGAAAGTTCTGAATGATGATGATTCCAATCACTGCCTGGCCTTCATGTTCATGAACTGGTCTTTTGTCTGA 2568 0.4735 MGVLLVGFNFMALSMHKDSPNKQMDSSKYVRYTPEQVEALERVYAECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKESCRLQTVNRKLTAMNKLLMEENDRLQKQVSHLVYENGYMRQQIHTASATTTDNSCESVVMSGQQQQQNPTPQHPHRDANNPAGLLAIAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGVAARACGLVSLEPTKVAEILKDRPSWYHDCRCLDVLSIVPTGNGGTIELMYMQTYAPTTLAAARDFWTLRYTTNLEDGSLVICERSLTSATGGPTGPPTSNFVRAEMLPSGYLIRPCEGGGSIINIVDHVDLDVWSVPEVLRPLYESSKILAQKMTIAALRHIRQIAQESSGEIQYGGGRQPAVLRTFSQKLCRGFNDAVNGFGDDGWSLMGNDGAEDVTIAINSSPNKFFGSHYNTSMFPAFGGGVLCAKASMLLQNVPPALLVRFLREHRSEWADYGVDAYSAACLKASPYGVPCARPGGFPSSQVILPLAPTIENEEFLEVVRIEGHAFSPEDMALARDMYLLQLCSGIDENAIGSCAQLVFAPIDESFADDAILLPSGFRVIPLDPKTNGSAATKTLDLASTLEAGSANARPPGEADLNNYNLRSVLTIAFQFMFENHLRENVAAMARQYVRSVVGSVQRVAMAIAPSRLSPQLGPKSLPGSPEALTLARWICRSYRTHTGGEIFRVESTATDAILKQLWHHSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKVIDEAGRKILCSEFSKITQQGYAYLPAGICVSSMNRPVSYEQAIAWKVLNDDDSNHCLAFMFMNWSFV 855
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g0104 855 Coils Coil 97 117 - -
Glsi03g0104 855 CDD bZIP 80 119 - -
Glsi03g0104 855 Gene3D - 20 92 - -
Glsi03g0104 855 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 24 855 IPR044830 GO:0003700
Glsi03g0104 855 FunFam Homeobox-leucine zipper protein REVOLUTA 28 83 - -
Glsi03g0104 855 SUPERFAMILY Bet v1-like 176 387 - -
Glsi03g0104 855 ProSiteProfiles START domain profile. 166 394 IPR002913 GO:0008289
Glsi03g0104 855 CDD START_ArGLABRA2_like 170 386 - -
Glsi03g0104 855 FunFam homeobox-leucine zipper protein ATHB-15 211 392 - -
Glsi03g0104 855 SUPERFAMILY Bet v1-like 423 610 - -
Glsi03g0104 855 MobiDBLite consensus disorder prediction 145 164 - -
Glsi03g0104 855 Pfam START domain 176 383 IPR002913 GO:0008289
Glsi03g0104 855 Gene3D - 194 389 IPR023393 -
Glsi03g0104 855 ProSiteProfiles 'Homeobox' domain profile. 23 87 IPR001356 GO:0003677
Glsi03g0104 855 Pfam MEKHLA domain 710 854 IPR013978 -
Glsi03g0104 855 SUPERFAMILY Homeodomain-like 27 89 IPR009057 -
Glsi03g0104 855 SMART HOX_1 25 91 IPR001356 GO:0003677
Glsi03g0104 855 SMART START_1 175 385 IPR002913 GO:0008289
Glsi03g0104 855 MobiDBLite consensus disorder prediction 145 169 - -
Glsi03g0104 855 Pfam Homeodomain 28 86 IPR001356 GO:0003677
Glsi03g0104 855 CDD homeodomain 28 88 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g0104 Glsi-ChrGlsi03 1489943 1497112 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi03g0104 15 855 Homeobox Transcription Factor Family AT2G34710 79.527 0.0 1399
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Glsi03g0104 START 4.4e-52 CL0209