Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g0102 ATGACTTCTTCTGCTCATGACCCCACTGATAATGAATCTAATGAGCAGCAAAAGCAATCAAATTCAAAGATGCAGTCTTCATCTGCAAATGGAGTTTCTGATTCAGGTATTGCTACGCAGAATGTTCAGTATGCAACACCTCCACAGCTTGGAACTGGGCATGCTATGGCACCGCCGGTTTACCCATATCCAGATCCTTACTATAGAAGCATCTTTGCTCCATATGATACGCAACCTTATCCCCCACAACCCTATGGTGCACAGCCAATGGTCCATCTTCAGTTAATGGGAATTCAACAAGCTGGTGTTCCTTTGCCAACTGATGCAGTTGAGGAGCCTGTGTTTGTTAATGCAAAACAGTATCATGGTATATTGCGACGCAGGCAGTCTCGTGCCAAAGCTGAATCAGAAAATAAAGTTATTAGGAATCGCAAGCCATACTTGCATGAATCTCGACATCTGCACGCATTGCGAAGAGCAAGAGGATGTGGAGGCCGGTTTCTGAATTCAAAGAAAAATGAGAACCAACAGAATGAGGTGGCATCAGCTGACAGATCACTGTCCAATATCAATCTCAATCCAGACAAGAATGATCTTGCTTCAGCAGGTAAGATCTCCTAA 621 0.4396 MTSSAHDPTDNESNEQQKQSNSKMQSSSANGVSDSGIATQNVQYATPPQLGTGHAMAPPVYPYPDPYYRSIFAPYDTQPYPPQPYGAQPMVHLQLMGIQQAGVPLPTDAVEEPVFVNAKQYHGILRRRQSRAKAESENKVIRNRKPYLHESRHLHALRRARGCGGRFLNSKKNENQQNEVASADRSLSNINLNPDKNDLASAGKIS 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g0102 206 Gene3D - 110 171 - -
Glsi03g0102 206 MobiDBLite consensus disorder prediction 169 196 - -
Glsi03g0102 206 ProSitePatterns NF-YA/HAP2 subunit signature. 115 135 IPR018362 GO:0003677|GO:0016602
Glsi03g0102 206 MobiDBLite consensus disorder prediction 1 54 - -
Glsi03g0102 206 MobiDBLite consensus disorder prediction 167 206 - -
Glsi03g0102 206 MobiDBLite consensus disorder prediction 1 48 - -
Glsi03g0102 206 ProSiteProfiles NF-YA/HAP2 family profile. 110 170 IPR001289 GO:0003700|GO:0006355
Glsi03g0102 206 Coils Coil 173 193 - -
Glsi03g0102 206 PRINTS CCAAT-binding transcription factor subunit B signature 144 167 IPR001289 GO:0003700|GO:0006355
Glsi03g0102 206 PRINTS CCAAT-binding transcription factor subunit B signature 113 135 IPR001289 GO:0003700|GO:0006355
Glsi03g0102 206 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 112 167 IPR001289 GO:0003700|GO:0006355
Glsi03g0102 206 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 7 184 IPR001289 GO:0003700|GO:0006355
Glsi03g0102 206 SMART cbf3 109 170 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g0102 Glsi-ChrGlsi03 1466723 1470418 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi03g0102 1 206 CCAAT-HAP2 Transcription Factor Family AT1G30500 57.488 5.75e-73 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Glsi03g0102 CBFB_NFYA 3.7e-26 No_clan