LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi03g0102	ATGACTTCTTCTGCTCATGACCCCACTGATAATGAATCTAATGAGCAGCAAAAGCAATCAAATTCAAAGATGCAGTCTTCATCTGCAAATGGAGTTTCTGATTCAGGTATTGCTACGCAGAATGTTCAGTATGCAACACCTCCACAGCTTGGAACTGGGCATGCTATGGCACCGCCGGTTTACCCATATCCAGATCCTTACTATAGAAGCATCTTTGCTCCATATGATACGCAACCTTATCCCCCACAACCCTATGGTGCACAGCCAATGGTCCATCTTCAGTTAATGGGAATTCAACAAGCTGGTGTTCCTTTGCCAACTGATGCAGTTGAGGAGCCTGTGTTTGTTAATGCAAAACAGTATCATGGTATATTGCGACGCAGGCAGTCTCGTGCCAAAGCTGAATCAGAAAATAAAGTTATTAGGAATCGCAAGCCATACTTGCATGAATCTCGACATCTGCACGCATTGCGAAGAGCAAGAGGATGTGGAGGCCGGTTTCTGAATTCAAAGAAAAATGAGAACCAACAGAATGAGGTGGCATCAGCTGACAGATCACTGTCCAATATCAATCTCAATCCAGACAAGAATGATCTTGCTTCAGCAGGTAAGATCTCCTAA	621	0.4396	MTSSAHDPTDNESNEQQKQSNSKMQSSSANGVSDSGIATQNVQYATPPQLGTGHAMAPPVYPYPDPYYRSIFAPYDTQPYPPQPYGAQPMVHLQLMGIQQAGVPLPTDAVEEPVFVNAKQYHGILRRRQSRAKAESENKVIRNRKPYLHESRHLHALRRARGCGGRFLNSKKNENQQNEVASADRSLSNINLNPDKNDLASAGKIS	206

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi03g0102	206	Gene3D	-	110	171	-	-
	Glsi03g0102	206	MobiDBLite	consensus disorder prediction	169	196	-	-
	Glsi03g0102	206	ProSitePatterns	NF-YA/HAP2 subunit signature.	115	135	IPR018362	GO:0003677\|GO:0016602
	Glsi03g0102	206	MobiDBLite	consensus disorder prediction	1	54	-	-
	Glsi03g0102	206	MobiDBLite	consensus disorder prediction	167	206	-	-
	Glsi03g0102	206	MobiDBLite	consensus disorder prediction	1	48	-	-
	Glsi03g0102	206	ProSiteProfiles	NF-YA/HAP2 family profile.	110	170	IPR001289	GO:0003700\|GO:0006355
	Glsi03g0102	206	Coils	Coil	173	193	-	-
	Glsi03g0102	206	PRINTS	CCAAT-binding transcription factor subunit B signature	144	167	IPR001289	GO:0003700\|GO:0006355
	Glsi03g0102	206	PRINTS	CCAAT-binding transcription factor subunit B signature	113	135	IPR001289	GO:0003700\|GO:0006355

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi03g0102	Glsi-ChrGlsi03	1466723	1470418	Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi03g0102	1	206	CCAAT-HAP2 Transcription Factor Family	AT1G30500	57.488	5.75e-73	217

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	NF-YA	Glsi03g0102		CBFB_NFYA	3.7e-26	No_clan

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