Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g0087 ATGAGTAATCATCGACAGGGAATTGGGAGGGCTGGCTCGAGTAAAAGAAGATTGAAAGATTTATTGCTTCAAAAAGACAATCGTTTTTGCGCTGATTGTAATGCTCCAGATCCTAAATGGGCGTCAGCAAATATTGGTGTTTTTATATGCTTAAAATGTTGTGGCGTGCACAGAAGCCTTGGCACTCATATATCAAAGGTTTTGTCTGTGACATTGGATGAATGGTCAGATGATGAAATAGATGCAATGATTGAAGTTGGAGGAAACTCTTCTGCTAATGCAATTTATGAGGCTTATATTCCAGAAGGATACACAAAGCCCACACCAGATGCCAGTCATGAGCTGCGTTCAAATTTCATCAGGTCCAAGTATGAGCTTCAAGAATTTTTGAAACCTGGCTTGCGCATTGCATCTGGCAAAAGCTCTCTAGAGTCTATTTCTTCCAACAAAATCATGGATAGTTTTCGAAGTTCTAGTACTTCACAGAAAACGGAAGGCATGGTAGAATTTATTGGATTGCTGAAGGTGAAAGTGGTTAAAGGCACAAATTTAGCTATTCGAGATATGAGGTCAAGTGATCCATATGTCATTTTGAATATTGGCCAGCAGAAGGCACAGACAACTGTAATAAACAGTAACTTGAATCCAGTCTGGAATGAGGAACTTATGCTGTCTGTTCCCCAGGAATTTGGACCATTGAAATTGCAAGTGTATGATCACGACACGTTTTCAGCCGATGATATAATGGGAGAAGCAGAGATTGATCTCCAGCCCCTGATAACATCTGCAATAGCATTTGGAAATGCAGGGATGTTTGGCGATATGCAGATAGGAAAATGGCTTCAATCCCATGACAATGCACTCATACAGGATAGCACAGTCAATATAGTTGATGGTAAGGTTAGACAGGAGATGTCGCTGAAGCTTCAGAACGTTGAATGTGGAGAAATAGATCTAGAGCTTGAGTGGATACCTCTTGATCAATAG 987 0.4053 MSNHRQGIGRAGSSKRRLKDLLLQKDNRFCADCNAPDPKWASANIGVFICLKCCGVHRSLGTHISKVLSVTLDEWSDDEIDAMIEVGGNSSANAIYEAYIPEGYTKPTPDASHELRSNFIRSKYELQEFLKPGLRIASGKSSLESISSNKIMDSFRSSSTSQKTEGMVEFIGLLKVKVVKGTNLAIRDMRSSDPYVILNIGQQKAQTTVINSNLNPVWNEELMLSVPQEFGPLKLQVYDHDTFSADDIMGEAEIDLQPLITSAIAFGNAGMFGDMQIGKWLQSHDNALIQDSTVNIVDGKVRQEMSLKLQNVECGEIDLELEWIPLDQ 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g0087 328 PRINTS HIV Rev interacting protein signature 46 63 IPR001164 GO:0005096
Glsi03g0087 328 PRINTS HIV Rev interacting protein signature 27 46 IPR001164 GO:0005096
Glsi03g0087 328 PRINTS HIV Rev interacting protein signature 67 88 IPR001164 GO:0005096
Glsi03g0087 328 Gene3D C2 domain 170 328 IPR035892 -
Glsi03g0087 328 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 13 328 IPR044518 GO:0005096|GO:0005543
Glsi03g0087 328 FunFam Arf-GAP with dual PH domain-containing protein 1 10 138 - -
Glsi03g0087 328 ProSiteProfiles C2 domain profile. 157 269 IPR000008 -
Glsi03g0087 328 Pfam Putative GTPase activating protein for Arf 16 131 IPR001164 GO:0005096
Glsi03g0087 328 CDD ArfGap 18 124 - -
Glsi03g0087 328 ProSiteProfiles ARF GTPase-activating proteins domain profile. 15 129 IPR001164 GO:0005096
Glsi03g0087 328 Pfam C2 domain 173 262 IPR000008 -
Glsi03g0087 328 SMART C2_3c 173 268 IPR000008 -
Glsi03g0087 328 SMART arf_gap_3 15 137 IPR001164 GO:0005096
Glsi03g0087 328 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 172 317 IPR035892 -
Glsi03g0087 328 CDD C2_ArfGAP 171 315 - -
Glsi03g0087 328 SUPERFAMILY ArfGap/RecO-like zinc finger 15 131 IPR037278 -
Glsi03g0087 328 Gene3D Arf GTPase activating protein 2 134 IPR038508 -
Glsi03g0087 328 FunFam ADP-ribosylation factor GTPase-activating protein AGD12 170 328 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g0087 Glsi-ChrGlsi03 1160654 1170910 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi03g0087 1 328 C2H2 Transcription Factor Family AT4G05330 73.512 0.0 524