Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g0071 ATGACACCGACTGCTTCTAATTTTCTTGCACTTCCCTCTGCTCGACCCTTCATTTTAATGCAACACCAAGCTTCCCTTCTTTTTACCAACTCCGTTCTTTTGTCCTCCATTAATATACCAAGTTCTCAACTATCTTCCAACGGATTGAAAGGCAATTCTAACTCGCACAAAAGAAAGTCTACCTTGAACTCCGATGTGAATCCTCCTGTATCCAAGGGTACAATATCTAGTCCAGAAGAAATTTTGTCACATAGAATGAAGCAGCCAGAAGAGGACTTTACTAGAGAAGAAAAATATGACGAGGATGAGGATGAGAATAACAATGACAATGATCATGTTAGTGATGAAGGAGTAGGTGGAGATGCTACTGTTTGTTATGATCATCAAGATGAAGCAGAGTACTTGTTAGGAGATGAAGGTCCAACCAGTACAGAGGAGGAACTTGAAAAAGGTCTTCTAACAAAAGATGCAGACGAGGATAATGAGTCTTCTACTCGACATTTCAGCGATGGATGTCACTTGATCCAAGGAAAGCTGGATCATGGAATGGAAGATTATATTTTTGCTCAACACAAACATATCAATGGTCATGACTTAGGGTTATATGCAATTTTTGATGGCCACTCAGGCCGTGATGTTGCAAAATACTTGCAAAGCCATTTATTTGGAAATATACTGAATGAGCCTGACTTCTGGAGAAATCCAGTGCGTGCAGTTAAAAGAGCATGTAAAGCTACCGATGATGAAATCTTAGAAAAAATAGCTGATTCACGGGGTGGATCAACAGCTGTTGCAGCAATACTAATAAATGGAGTGAAGTTACTGGTGGTCAATGTTGGTGATTCTCGAGCAATATTATGCAGGAATGGTCTTGCAAAACAAATTACAGTAGATCATGAGCCACAGAAGGAGAAAGATCTTGTTGAGAGCAGAGGTGGTTTTGTGTCTAAGAGACCTGGGTGTGTTCCAAGAGTAGATGGCCAATTAGCAATGACCCGGGCATTCGGGGATGGAAACCTGAAGGAACATATTACTGCAGAACCAGATGTGATGGTTCAGAAGATTGATGAGGACACTGACTTCATCATTTTGGCCAGTGATGGCCTGTGGAAGGTGATGACAAATCAAGAGGCCTGTGACTGCATCAAAGATATTGATGATGCTCAAAAGGCATCTAAAAATTTGATTAAAGAAGTCTTATCTCAAGGAAGCAACGATGATATTTCATGCATTGTTGTAATGTTCTAG 1248 0.4046 MTPTASNFLALPSARPFILMQHQASLLFTNSVLLSSINIPSSQLSSNGLKGNSNSHKRKSTLNSDVNPPVSKGTISSPEEILSHRMKQPEEDFTREEKYDEDEDENNNDNDHVSDEGVGGDATVCYDHQDEAEYLLGDEGPTSTEEELEKGLLTKDADEDNESSTRHFSDGCHLIQGKLDHGMEDYIFAQHKHINGHDLGLYAIFDGHSGRDVAKYLQSHLFGNILNEPDFWRNPVRAVKRACKATDDEILEKIADSRGGSTAVAAILINGVKLLVVNVGDSRAILCRNGLAKQITVDHEPQKEKDLVESRGGFVSKRPGCVPRVDGQLAMTRAFGDGNLKEHITAEPDVMVQKIDEDTDFIILASDGLWKVMTNQEACDCIKDIDDAQKASKNLIKEVLSQGSNDDISCIVVMF 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g0071 415 CDD PP2Cc 168 413 IPR001932 -
Glsi03g0071 415 SUPERFAMILY PP2C-like 166 415 IPR036457 -
Glsi03g0071 415 MobiDBLite consensus disorder prediction 41 78 - -
Glsi03g0071 415 MobiDBLite consensus disorder prediction 95 110 - -
Glsi03g0071 415 FunFam Probable protein phosphatase 2C 39 161 415 - -
Glsi03g0071 415 MobiDBLite consensus disorder prediction 41 123 - -
Glsi03g0071 415 Pfam Protein phosphatase 2C 180 408 IPR001932 -
Glsi03g0071 415 Gene3D - 166 415 IPR036457 -
Glsi03g0071 415 PANTHER PROTEIN PHOSPHATASE 143 413 IPR015655 GO:0004722|GO:0006470
Glsi03g0071 415 SMART PP2C_SIG_2 180 415 IPR001932 -
Glsi03g0071 415 SMART PP2C_4 162 413 IPR001932 -
Glsi03g0071 415 ProSiteProfiles PPM-type phosphatase domain profile. 169 415 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g0071 Glsi-ChrGlsi03 995961 1002134 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi03g0071 166 415 PP2C-type Phosphatase Gene Family AT4G28400 57.371 1.60e-102 303