LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi03g0031	ATGGACAATTATCAAGGTGATTTAACTGACATAGTCCGAGCTAGTGGTGGCGGAGCATATCATGGTAGCTTCAGTAGTGCAGGCAACTCTTCATCTGAAGCTCCTCCTTTTTCTGACTGGAACTTCGCTTCTGATCCCATGAATTTCTCTTCTGTTGGGGAAGAATCCAGACACAACTTTGGCTTTCCATTCTCAAACAGGCAAGATCCCTTACTACATGAGCTTCATATACCTGGTTCTTCCTTCTTTAATAGCATAAGTTCTTGGGGTACGGAAGAAGCAGCTTGTGGTACTACTTCTTTATTGGGACAGAAGATTCTTGAGGACGATATGAGAAGGCCTTGTAACAACATATTCTCAAACTTGGTTCAGATCTCTCCCAATGCAAAGCTACCCATCTCGCCGTGTGGTTCGCCGGTGATGACTGCTTCGCCGAGGGCAATTAAGTCTTCTGCTGTGGTTTCAGACAACACCGGAGTGCAGATCTCATCTTCAAGGAATCCGGGTCTTAAGCGAAGGGGTTATTATAGATGCAGCAGCTCAAAGGGTTGCTCCGCTAGAAAACAAGTTGAGAGGAGCAGGACAGACCCAAACATGTTGGTCATCACTTACACCTCGGAGCACAACCATCCATGGCCAACTCAAAGAAACGCTCTGGCTGGCTCTACCAGGTCCTATTCTTCCAAAACCAATGCTGTTTCAAAGAATCCAGAAAGTACTCATCCCCAAAAGGCCACCAGAAAACCGAAAGACGAAGAGCAGCTAAAGAGCAATATGGAGAGCAATGTGCTGGGTGGAAACTCAGGCAACAATGCTTTTGTAAAAGAAGAGATGGAAGAAGACATAGAGAAGCAGGCCGTAGTCGAGATGGACGATAGAGAATTCAGTGATGGACTTCCATACAAATCATTCCAATCCGAGGACTTCTTTGCAGAATTGGAAGAAATAGAAGCTGACCCTCTGAACCTCTTGTTCAGTGATGCAGCTGAGGTCCAGAAAGAATCCATGGCTTTAGATCCATCCCATCTCTTTGAATGGTCAGCAGACACCACCTTATTTGAGGGTTATAACAAGACCTTGAAAAAACTACCTTAA	1095	0.4521	MDNYQGDLTDIVRASGGGAYHGSFSSAGNSSSEAPPFSDWNFASDPMNFSSVGEESRHNFGFPFSNRQDPLLHELHIPGSSFFNSISSWGTEEAACGTTSLLGQKILEDDMRRPCNNIFSNLVQISPNAKLPISPCGSPVMTASPRAIKSSAVVSDNTGVQISSSRNPGLKRRGYYRCSSSKGCSARKQVERSRTDPNMLVITYTSEHNHPWPTQRNALAGSTRSYSSKTNAVSKNPESTHPQKATRKPKDEEQLKSNMESNVLGGNSGNNAFVKEEMEEDIEKQAVVEMDDREFSDGLPYKSFQSEDFFAELEEIEADPLNLLFSDAAEVQKESMALDPSHLFEWSADTTLFEGYNKTLKKLP	364

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi03g0031	364	PANTHER	WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED	173	323	IPR044810	GO:0003700
	Glsi03g0031	364	MobiDBLite	consensus disorder prediction	207	240	-	-
	Glsi03g0031	364	Pfam	WRKY DNA -binding domain	172	211	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Glsi03g0031	364	MobiDBLite	consensus disorder prediction	207	270	-	-
	Glsi03g0031	364	Gene3D	WRKY domain	150	214	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Glsi03g0031	364	MobiDBLite	consensus disorder prediction	241	257	-	-
	Glsi03g0031	364	SUPERFAMILY	WRKY DNA-binding domain	171	213	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Glsi03g0031	364	ProSiteProfiles	WRKY domain profile.	173	213	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Glsi03g0031	364	SMART	WRKY_cls	161	212	IPR003657	GO:0003700\|GO:0006355\|GO:0043565

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi03g0031	Glsi-ChrGlsi03	362039	364127	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi03g0031	1	349	WRKY Transcription Factor Family	AT1G30650	33.953	1.01e-47	165

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Glsi03g0031		WRKY	2e-13	CL0274