LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi03g0030	ATGCTCCAAAACAGCCACTATTACGCCAACTCCACATCATACTGTGAGATTAGGCTTGAAGTCAGTGTGAATCAATGTGCTTTAGTCCACATTTGTGAGTGTGAAGACTGGGGAAAGAGACAGAAGAGTGTCTCGCCAGAACGGAGGGTGAGAGAGCCGCTGCTCCCAGAGTCATCGGCGCTCCGAGCTCCTCCATTTACAGCGCCGCTTCGCTTTCAACTGAGAGATTGTTTGATGGACCAGTACGAGAAAGTTGAGAAGATAGGTGAAGGAACCTATGGTGTTGTTTACAAGGCTCGTGACCGGGTCACTAATGAGACTATAGCGTTGAAGAAAATTCGACTGGAGCAGGAAGATGAGGGTGTGCCTAGCACTGCAATACGAGAGATTTCCCTCTTGAAAGAAATGCAGCATAGAAACATTGTTAGGCTACAGGATGTAGTGCACAGTGAGAAACGTTTGTACCTGGTATTTGAGTATCTTGACCTAGATCTAAAGAAGCACATGGATTCATGCCCAGAATTTTCAAAAGATCTCCGACAAGTAAAAATGTTTCTGTATCAAATTCTCTGTGGCATTGCTTATTGTCATTCACATAGAGTTCTTCATCGAGACTTGAAACCGCAGAATTTGTTGATCGATCGCCGCACTAATGTACTAAAGCTAGCAGATTTTGGATTAGCCAGGGCATTTGGTATTCCTGTCAGAACATTTACACATGAGGTGGTGACCCTATGGTACAGAGCTCCAGAAATATTGCTTGGATCTCGCCATTATTCTACCCCTGTCGATGTTTGGTCAGTGGGCTGTATATTTGCAGAGATGGTAAACCAACGCCCACTGTTCCCTGGAGACTCTGAGATTGATGAATTGTTTAAAATATTCAGAATCTTGGGTAAGCCAAACGAAGAGACATGGCCTGGAGTGACTTCATTGCCTGATTTTAAATCATCCTTTCCCAATTGGCCTGCTAAGGATCTATCAACTATGGTTCCAAATCTTGAGCCAGCTGGTGTTGATCTTCTTTCTAGTATGCTTTGCTTGGATCCCACAAGAAGGATTACAGCCAGGAGCGCTCTTGAGCATGAATACTTCAAGGACATCAAATTTGTACCCTGA	1119	0.4424	MLQNSHYYANSTSYCEIRLEVSVNQCALVHICECEDWGKRQKSVSPERRVREPLLPESSALRAPPFTAPLRFQLRDCLMDQYEKVEKIGEGTYGVVYKARDRVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHRNIVRLQDVVHSEKRLYLVFEYLDLDLKKHMDSCPEFSKDLRQVKMFLYQILCGIAYCHSHRVLHRDLKPQNLLIDRRTNVLKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQRPLFPGDSEIDELFKIFRILGKPNEETWPGVTSLPDFKSSFPNWPAKDLSTMVPNLEPAGVDLLSSMLCLDPTRRITARSALEHEYFKDIKFVP	372

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi03g0030	372	FunFam	Cell division control protein 2	79	162	-	-
	Glsi03g0030	372	Pfam	Protein kinase domain	82	365	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi03g0030	372	Gene3D	Transferase(Phosphotransferase) domain 1	164	370	-	-
	Glsi03g0030	372	SMART	serkin_6	82	365	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi03g0030	372	Gene3D	Phosphorylase Kinase; domain 1	79	162	-	-
	Glsi03g0030	372	CDD	STKc_CDK1_CdkB_like	82	365	-	-
	Glsi03g0030	372	SUPERFAMILY	Protein kinase-like (PK-like)	75	368	IPR011009	-
	Glsi03g0030	372	PANTHER	CELL DIVISION PROTEIN KINASE	79	365	-	-
	Glsi03g0030	372	ProSiteProfiles	Protein kinase domain profile.	82	365	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi03g0030	372	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	201	213	IPR008271	GO:0004672\|GO:0006468
	Glsi03g0030	372	FunFam	Cell division control protein 2 homolog	164	370	-	-
	Glsi03g0030	372	ProSitePatterns	Protein kinases ATP-binding region signature.	88	111	IPR017441	GO:0005524

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi03g0030	Glsi-ChrGlsi03	349020	357469	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi03g0030	79	372	Core Cell Cycle Gene Families	AT3G48750	85.374	0.0	532

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_CDK-Pl	Glsi03g0030		Pkinase	9.5e-80	CL0016