Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g0027 ATGGGTGCAATAGATTTTTTTTTGACTTGGTTTTCAGAATCGATTACAGGACAAGGTCCGGGAACCAAAGCTATGCAGAGCCAGCTTGTGTGTAGTGGATGTAGGAGCATTTTGCTTTACCCTAGAGGTGCAACCAATGTATGTTGTGCATTGTGCAACACAATTACCTCTGTTCCTCCACCTGGAATGGAAATGTCTCAACTTTATTGTGGAGGCTGTAGGACATTGCTAATGTACACACGTGGAGCTACAAGTGTGAGATGTTCCTGCTGTCAAACTGTTAACCATGCACAAGCATCTAACCAAGTTGCACATATCCTCTGTGGGAACTGCCGGACAACACTCATGTACCCATATGGAGCTCCATCAGTCAAATGTGCAATTTGTCACTATATTACTAACGTCAGTGTGACTAATGGAAGGATTCCAATTCCTGTCCAGAGACTTAATGGAACAACAAACTCTGGAACAATACCTTCTACTTCAACGAGCCAAACTGTCGTGGTTGAAAATCCCATGTCTGTTGATGCAAGTGGGAAATTGGTGAGCAATGTTGTCGTTGGCGTTACAAGAGATAAGAAATAA 585 0.4291 MGAIDFFLTWFSESITGQGPGTKAMQSQLVCSGCRSILLYPRGATNVCCALCNTITSVPPPGMEMSQLYCGGCRTLLMYTRGATSVRCSCCQTVNHAQASNQVAHILCGNCRTTLMYPYGAPSVKCAICHYITNVSVTNGRIPIPVQRLNGTTNSGTIPSTSTSQTVVVENPMSVDASGKLVSNVVVGVTRDKK 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g0027 194 Pfam LSD1 zinc finger 108 132 IPR005735 -
Glsi03g0027 194 Pfam LSD1 zinc finger 70 94 IPR005735 -
Glsi03g0027 194 Pfam LSD1 zinc finger 31 55 IPR005735 -
Glsi03g0027 194 PANTHER PROTEIN LSD1 25 57 IPR040319 -
Glsi03g0027 194 NCBIfam zinc finger domain, LSD1 subclass 67 96 IPR005735 -
Glsi03g0027 194 NCBIfam zinc finger domain, LSD1 subclass 105 134 IPR005735 -
Glsi03g0027 194 NCBIfam zinc finger domain, LSD1 subclass 28 58 IPR005735 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g0027 Glsi-ChrGlsi03 328246 340404 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Glsi03g0027 zf-LSD1 1.7e-11 No_clan