Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g0026 ATGACTTGGAGTAACGATGGCCACTTGGCATCAAGTTTATTCCTTGTAGAACAAGAAGAGGCGCAGTTTGTGAAATTCTTTTGGTTGAAATTGGATCCACTATCTCATACCAAAGAGATATCTGCCAGATGGGATCCAGTTGAAGCATGCCAGCCTACAATTGACGATGCACCTGTGTTTTATCCAACTGTTGAGGAGTTTGAGGACACACTTGGTTACATAGCGAAGATTCGTCCCCAAGCTGAACCCCATGGCATATGTAGGATTGTTCCTCCACCTAGCTGGGTTCCTCCCTGCCCTCTTAAGGAGAAAAATTTATGGGAAAATGCTAAATTTCCTACCCGCATACAGCAGATTGATTTGCTTCAAAATAGGGAACCAATGAGAAAGAAAAGTAGGGGAAGGAAACGAAAACGTAGAAAGCACTCAAAAATGGGAACATGTAGGAGACTTTCCAATTCAGGTTTGGAAGCTAATGTTGCCTCTGAACCTGATGAAAAATTTGGATTCCAATCAGGACCAGACTTCACACTTGCAGACTTTCAACGATATGCTGATTTCTTTAAGGAATGCTACTTTGGGATAAAGGATGTTAAAGAAAACCTAAATTTTTGTGATGATAATGACCAGAAGAGATGGGAACCCACTGTGGAGGACATTGAAGGTGAATATTGGCGAATAGTTGAGCAACCAACAGATGAGGTCGAGGTGCATTATGGCGCTGACTTGGAAATTGGAGCGCTTGGAAGTGGTTTTCCTAAGGCATCATCCTTAAGTAAAAATGATTTGGATCAGTATACCCTGTCTGGCTGGAATCTTAATAACTTCCCACGACTTCCAGGTTCTGTACTATGTTTTGAAGGAAGTGATATTTCAGGAGTTCTTGTGCCTTGGCTGTATGTCGGGATGTGTTTTTCATCTTTTTGCTGGCATGTTGAGGATCATCACCTATATTCACTTAATTATATGCACTGGGGTGATCCTAAAGTATGGTACGGAGTACCTGGAAGCCATGCTTCAGCTTTGGAAGATGCAATGAGGAAGCATTTACCTGATTTATTTGAGGAACAACCGAATCTACTCAATGAACTGGTTACACAACTATCTCCTTCAATTCTTAAATCTGAGGGAGTTCCTGTATATCGAGCTGTTCAACATTCTGGGGAATTCATTATTACCTTTCCAAGGGCATACCATGCTGGCTTCAATTGTGGCTTCAACTGTGCAGAGGCAGTGAATGTGGCACCTGTTGATTGGTTACTGCATGGCCAGAATGCAGTTGAGCTTTACAGCAAACAATGTCGTAAGACATCATTGTCACATGACAAGTTGTTATTAGGATCGGCTCAGGAAGCTGTACGAGCTCTTGCAGAGCTAGAGCTTGGAATGAAATCTTCAAGAAGTTTGAAATGGAGAAGTTTCTGTGGGAAAGATGGAGTTCTTACTAAGGCAATTAAGACAAGGGTAAAGATGGAAGAAGAGAGGTTAAACTGTTTTTCGACTCATTTGAAGTTGCTGAAGATGGATAGCAACTTTGATACGGATAAGGAAAGAGAATGCTTCGTTTGCTTTTATGACTTGCACCTATCTGCCGCAGGCTGCAAGTGCTCTCCTGAGAAATATTCTTGTCTTAGACACTCAAATTTTCTTTGTTCATGTGGAATGGACAAAAGATTTGTTCTTCTCCGTTATACTATAAATGAGCTAAATAAATTGGTTGAGGCATTAGAAGGGGAATCAGATGCTATTAAGTTGTGGGCAAATAAAAAGGCTGGGGTGGATTCTGTTGATGCTGAGGATGTTTGCATAGATAAGCCAGATTTGGAGAAAGACTTGTGCAAAACAATGATTCATGAAGGGAGAGAAAGTTCATCTTGTTATGCAGGAACCAAAGAGAAGTCAAATTTAAATGCACCTACCAGTCCCTGTAGTCATGTTTCTTCGGAGTTAGTCCAGTCAGAGTCTCACCAAGGAACTTTAAGTGCATCATATGGCACTATAGATAGTTGTATTGGCAATTGGGATGATAAAATTTTGGTTAAGGAAAATGAAGTTAAGGTGGAGCAGGCAGGTTATATGGATTTGAATATTGATGTTATATCTGGAGGAAATGAAAATTATTTGTTGCTTTCTGATAATCATCAAAATAAGGGCATTGCTTATATGGAAAAAATATGTTATTTAGATGCAGAAAAGGAACAGGACAAGATGGAACTTGATGGTGAGAATAACTTATCAGACTCATTTGCTCTTCTGAAGAAAGATGGTCCATCATGTTCAGGGGATGCTTGCAATTCTAGTTCATTACATGGTGGCAGGTTGTTTGGGGTTGATCTGCAAATGCATCCTGATGCCAAAGTTCTACCTAACAGTGTATTTAAAATGGAAGTTGTAGAAACCTTCGATACAAATATACCATCATCAGGCCAAAGTAACCTAATGCAAAATCTTTGCAATTCTGTCAAGCCTATCAGTTTGGGCTCCATTGTGTATGGAAAGCTGTGGTGCAGTAAGCAGGCAATATTTCCAAAAGGATTTAAGAGCCGTGTTAAGTTCTTTAGCATGCTTGATCCAGCAAAAATCTGTGGCTATATTTCTGAAGTCCTTGATGCTGGGTTTCTTGGGCCTATTTTCAAGGTTACCATGGAAGAACATCCCAGTGAGGCATTCACAAATATCTCAGCGGAGAAGTGCTGGGAATCTGTTCTAGTGAGACTAGTTGATGAAACATTAAGGCGGAGGAGTCTAGGGGAACTAGAACTTCCCCCCTTGGAACTCCTGAAAGACATTAATGGTCTTAAAATGTTTGGATTTCTTTCCCCACCCATTATTCAGGCCATTGAAGCTCAGGATCGCAGTCATCAATGCGAGGAATACTGGAATAACAAGGAAGTGGTCTCTGTATCTTCATTCAGTGCCAGTGATGACTATAAGTTCACTCATGGTTCAAGTAGCCCTTTAGGTGACATCAATTTAATGAAGCAGGATCAAGAGAATTCACTTATGAGAGGAAGCCTTCAATCATTTGAAGAAATGAAATCAATACTAGAAGGATTTTTAAGAAAGGCGAGTCCTGATGAGTTATACACAATGCATAAGTTATTCAGCTCTGACGCTCAGAGTTCTCAGTGGAGAGTGGCATTTGTAGCACTGATCGAGGAGATCCAAAAAGCTTGTAGATAA 3183 0.405 MTWSNDGHLASSLFLVEQEEAQFVKFFWLKLDPLSHTKEISARWDPVEACQPTIDDAPVFYPTVEEFEDTLGYIAKIRPQAEPHGICRIVPPPSWVPPCPLKEKNLWENAKFPTRIQQIDLLQNREPMRKKSRGRKRKRRKHSKMGTCRRLSNSGLEANVASEPDEKFGFQSGPDFTLADFQRYADFFKECYFGIKDVKENLNFCDDNDQKRWEPTVEDIEGEYWRIVEQPTDEVEVHYGADLEIGALGSGFPKASSLSKNDLDQYTLSGWNLNNFPRLPGSVLCFEGSDISGVLVPWLYVGMCFSSFCWHVEDHHLYSLNYMHWGDPKVWYGVPGSHASALEDAMRKHLPDLFEEQPNLLNELVTQLSPSILKSEGVPVYRAVQHSGEFIITFPRAYHAGFNCGFNCAEAVNVAPVDWLLHGQNAVELYSKQCRKTSLSHDKLLLGSAQEAVRALAELELGMKSSRSLKWRSFCGKDGVLTKAIKTRVKMEEERLNCFSTHLKLLKMDSNFDTDKERECFVCFYDLHLSAAGCKCSPEKYSCLRHSNFLCSCGMDKRFVLLRYTINELNKLVEALEGESDAIKLWANKKAGVDSVDAEDVCIDKPDLEKDLCKTMIHEGRESSSCYAGTKEKSNLNAPTSPCSHVSSELVQSESHQGTLSASYGTIDSCIGNWDDKILVKENEVKVEQAGYMDLNIDVISGGNENYLLLSDNHQNKGIAYMEKICYLDAEKEQDKMELDGENNLSDSFALLKKDGPSCSGDACNSSSLHGGRLFGVDLQMHPDAKVLPNSVFKMEVVETFDTNIPSSGQSNLMQNLCNSVKPISLGSIVYGKLWCSKQAIFPKGFKSRVKFFSMLDPAKICGYISEVLDAGFLGPIFKVTMEEHPSEAFTNISAEKCWESVLVRLVDETLRRRSLGELELPPLELLKDINGLKMFGFLSPPIIQAIEAQDRSHQCEEYWNNKEVVSVSSFSASDDYKFTHGSSSPLGDINLMKQDQENSLMRGSLQSFEEMKSILEGFLRKASPDELYTMHKLFSSDAQSSQWRVAFVALIEEIQKACR 1060
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g0026 1060 Pfam C5HC2 zinc finger 520 572 IPR004198 -
Glsi03g0026 1060 SMART fyrc_3 877 969 IPR003889 GO:0005634
Glsi03g0026 1060 PANTHER LYSINE-SPECIFIC DEMETHYLASE 51 729 - -
Glsi03g0026 1060 FunFam Putative lysine-specific demethylase JMJ16 819 957 - -
Glsi03g0026 1060 Pfam JmjC domain, hydroxylase 298 414 IPR003347 -
Glsi03g0026 1060 Pfam F/Y rich C-terminus 875 961 IPR003889 GO:0005634
Glsi03g0026 1060 Gene3D - 818 957 - -
Glsi03g0026 1060 Pfam jmjN domain 58 91 IPR003349 -
Glsi03g0026 1060 Pfam F/Y-rich N-terminus 824 868 IPR003888 GO:0005634
Glsi03g0026 1060 SMART fyrn_3 827 871 IPR003888 GO:0005634
Glsi03g0026 1060 MobiDBLite consensus disorder prediction 129 146 - -
Glsi03g0026 1060 SMART JmjN_1 56 97 IPR003349 -
Glsi03g0026 1060 ProSiteProfiles FYR domain FYRN motif profile. 813 871 IPR003888 GO:0005634
Glsi03g0026 1060 ProSiteProfiles FYR domain FYRC motif profile. 873 964 IPR003889 GO:0005634
Glsi03g0026 1060 Gene3D Cupin 42 415 - -
Glsi03g0026 1060 ProSiteProfiles JmjN domain profile. 57 98 IPR003349 -
Glsi03g0026 1060 SMART cupin_9 265 431 IPR003347 -
Glsi03g0026 1060 MobiDBLite consensus disorder prediction 124 146 - -
Glsi03g0026 1060 SUPERFAMILY Clavaminate synthase-like 270 452 - -
Glsi03g0026 1060 ProSiteProfiles JmjC domain profile. 265 431 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g0026 Glsi-ChrGlsi03 315570 326559 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi03g0026 38 1036 JUMONJI Transcription Factor Family AT1G08620 44.659 0.0 810
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Glsi03g0026 JmjC 4.3e-46 CL0029