Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g0024 ATGGGTTTCTTTTCTCAAACATGGCTTCATTTCCCCTTGTATTTTCTTCCTTTTCTTGTCCACTGCCTTTTGCTTCGTGCAGCATCGAGCTCTCTAAGCATTACCACAGATACAGAAGCTTTGATCTCATTTAAGTCTCAATTCAGCAATGATCCTCCTCACCCATTATCTTCTTGGAGCCACAGTTCATCGCCCTGCAACTGGACTGGCGTAATCTGCAACAGGCTTGGTCCCAGAGTGATTGCCTTAAACCTTTCAGGCTTGAGACTCTCGGGTCATTTAAGCCCTTATATAGGTAACTTGTCTTTCCTTCGGTCCCTCCAGTTGCAGGATAACCAATTCACAGGAGTGATTCCTGAGCAAATTGGCAATCTTGTTCGGCTGAGAACTCTAAACATGAGTTCTAACAGCATCGAAGGAAAGATTCCTTCAAACATCAGTCGCTTGACTGAACTCCAAATGCTTGACTTGTCGTCTAACAAGATTGTTAGCCAAATTCCCGAAAATATTGGCCTCTTGACAAATCTTCAAGTCTTGAAATTGGGAAGCAATAATCTCTTTGGTGAAGTTCCACCAAGTCTTGGAAATATTTCATCACTCACAAATGTCAGTTTTGGCACTAACATTCTAAGTGGCAGGATTCCAAGTGAATTGGGTCGGCTTAAGAAATTGGTTGAGCTTGATCTCACTATCAACAATCTCACTGGGACTATTCCACCTTCTATATTTAATTTATCTTCCCTACTTCACTTGGCTTTAGCTTCCAACAATTTGTGGGGTGAGATTCCTCAGGATGTTGGTGATAAACTTCCAAAACTCCTAGTGTTCAAGTTCTGCTTTAATAGATTCACAGGCAGAATTCCTGGATCTTTGCATAATCTCACCAACATTCAAGTCATCCGCCTGGGTCACAACCTTTTGGAAGGAACAGTGCCACCGGGTCTTGGAAATCTCCCATTCCTTCACATGTATATTATTCGGAATAATAGGATAGTCAACTCAGGAGACACAGGTCTTGACTTCATTACTTCTTTGACGAACTGCACCGTCCTCAACTTTCTTGCAATTGATGGCAATAGGCTGGAAGGTGTAATTCCTGAGACCGTTGGCAATCTGTCCAAGGTCCTCTCAAAATTATACATGGGAGAGAATCGTTTCCAAGGAAACATACCCACCTCCCTTGCCCATCTTAGTGGCTTGAGTTTATTAAACTTGAGCTACAATGCCATCTCCGGAGAAATCTCACCTGAGTTAGGCCAATTAGAGGAACTGCAAGAGCTAAATCTGGCTGGAAATCATCTATCAGGAAGTATTCCAAACTCCCTTGGTAGTCTTCAAAAGTTAAACCAAATTGATTTGTCAAGCAATAAGCTTGTAGGTAAAATACCATTTAGTTTTGGCAATTTACAAAACCTTCTCTCGATGGACTTATCTAACAACAAGCTCAATGGAAGCATACCCAAAGAAATACTGAATCTCCCAACTCTGAGCAATGTTTTAAATGTGTCTAAGAACTTCTTAAGTGGATCTTTGCCTCAAGAAGTAGGGAATTTGATTAGAGTTGCTTCCTTAGACCTCTCTAACAACCTTTTATCTGGTAACATCCCCCGCTCAATCAAAAATTGTCTGAGCCTGAAAAATTTATTTTTGGCCAGGAATATGCTTTCAGGACCGATTCCAAAAACACTTGGAGAGGTCAGAGGCTTGGAAACCCTAGACCTTTCCTCCAACCAACTCTCTGGTTCCATTCCTGTTGAACTTCAAAATCTAAATGCCCTTCAGTTGTTGAACCTCTCTTATAATGATGTAGAAGGAGCCATTCTCGGTGGTGGAGTTTTCAAAAATCTCTCTGCTGTCCATTTAGAAGGCAATAGGAGACTTTGTTCGCTCTCCGCATGTGTGACTCGAGGCCGCGGAAGAAAGATGCTCCAAATTTATATCATCATACCTACTGTGGTATCATTTATACTATGTTTCACAATTGGTTTGCTGCTATACGTAAAGAGGAGAAAACTAAAGGTAGCAGCATCATCTGACATGATAAAGCAATATCATCCAATTGTCTCTTATGATGAGCTCCGTCAGGCAACTGGGAACTTCAACCAAAATAATTTAATAGGAATTGGGAGCTTTGGGTCAGTCTATAGAGGCCATCTAAGTCAAGCGAGTACTGTTGCAGTCAAAGTCTTCGACACTTTAAGAACTGGTTCTTTGAAGAGTTTCTTTGCAGAGTGTGAGGCTTTGAGGAATGCAAGGCATCGAAATCTGATTAAGCTAATCACATCATGCTCTAGCATAGACTTTACGAACAATGAATTTCTGGCTCTGGTTTACGAGTTCCTATGTAATGGCAGCTTGGAAGATTGGATTAAGGGAAAGAGAAAGCATTCAAATGGAAATGGGTTGAACTTGATGGAGAGACTGAATATTGCCATTGATGTTGCTTGTGCATTGGATTACCTGCACAATGATAGTGGAATTCCTATTGTGCATTGTGATTTGAAGCCCGTCAACATTCTTTTGGATGAAGATATGACTGCAAAGGTGGGAGACTTCGGATTGGCTAGGCTGCTGATTGAAAGACCAACTAATATTCAAGTCTCAATAAGCTCCACTCATGTCCTTAGAGGTTCAATTGGCTACATACCTCCAGAGTATGGATGGGGAGAAAAGCCATCAGTGGCCGGAGATGTATACAGTTTTGGAATTGTGTTGCTTGAGCTCTTTTCTGGGAAGAGCCCAACAGACGATAGCTTCACGGGAGGTCTAAGCCTAAGAAGATGGGTGCAATCGGCACTTACAGAAAAGATAGTGCAAGTCATCGACCCTCAGCTTCTATCACTCATGTTTAATAATGACCACGCCAGAAGTCCCAATCTACAAATTGATTGTCTGATCGCAGTTCTCAGAGTTGGGTTAGCCTGCACCGCAGATTCTCCAGAGGGACGCCTTGGCACGAAAGATGCTGTTGGCAAGCTAAAAGCTGCCAGAGACGCTCTTTTCAAACCCACTGAAAATAGGAGGCCTTCCCAGCATTAG 3039 0.4218 MGFFSQTWLHFPLYFLPFLVHCLLLRAASSSLSITTDTEALISFKSQFSNDPPHPLSSWSHSSSPCNWTGVICNRLGPRVIALNLSGLRLSGHLSPYIGNLSFLRSLQLQDNQFTGVIPEQIGNLVRLRTLNMSSNSIEGKIPSNISRLTELQMLDLSSNKIVSQIPENIGLLTNLQVLKLGSNNLFGEVPPSLGNISSLTNVSFGTNILSGRIPSELGRLKKLVELDLTINNLTGTIPPSIFNLSSLLHLALASNNLWGEIPQDVGDKLPKLLVFKFCFNRFTGRIPGSLHNLTNIQVIRLGHNLLEGTVPPGLGNLPFLHMYIIRNNRIVNSGDTGLDFITSLTNCTVLNFLAIDGNRLEGVIPETVGNLSKVLSKLYMGENRFQGNIPTSLAHLSGLSLLNLSYNAISGEISPELGQLEELQELNLAGNHLSGSIPNSLGSLQKLNQIDLSSNKLVGKIPFSFGNLQNLLSMDLSNNKLNGSIPKEILNLPTLSNVLNVSKNFLSGSLPQEVGNLIRVASLDLSNNLLSGNIPRSIKNCLSLKNLFLARNMLSGPIPKTLGEVRGLETLDLSSNQLSGSIPVELQNLNALQLLNLSYNDVEGAILGGGVFKNLSAVHLEGNRRLCSLSACVTRGRGRKMLQIYIIIPTVVSFILCFTIGLLLYVKRRKLKVAASSDMIKQYHPIVSYDELRQATGNFNQNNLIGIGSFGSVYRGHLSQASTVAVKVFDTLRTGSLKSFFAECEALRNARHRNLIKLITSCSSIDFTNNEFLALVYEFLCNGSLEDWIKGKRKHSNGNGLNLMERLNIAIDVACALDYLHNDSGIPIVHCDLKPVNILLDEDMTAKVGDFGLARLLIERPTNIQVSISSTHVLRGSIGYIPPEYGWGEKPSVAGDVYSFGIVLLELFSGKSPTDDSFTGGLSLRRWVQSALTEKIVQVIDPQLLSLMFNNDHARSPNLQIDCLIAVLRVGLACTADSPEGRLGTKDAVGKLKAARDALFKPTENRRPSQH 1012
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g0024 1012 Pfam Leucine rich repeat N-terminal domain 36 74 IPR013210 -
Glsi03g0024 1012 PRINTS Leucine-rich repeat signature 566 579 - -
Glsi03g0024 1012 PRINTS Leucine-rich repeat signature 472 485 - -
Glsi03g0024 1012 SMART serkin_6 700 968 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi03g0024 1012 SUPERFAMILY L domain-like 34 333 - -
Glsi03g0024 1012 SUPERFAMILY L domain-like 375 631 - -
Glsi03g0024 1012 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 781 1006 - -
Glsi03g0024 1012 ProSiteProfiles Leucine-rich repeat profile. 151 173 IPR001611 GO:0005515
Glsi03g0024 1012 Pfam Leucine rich repeat 104 162 IPR001611 GO:0005515
Glsi03g0024 1012 Pfam Leucine rich repeat 544 602 IPR001611 GO:0005515
Glsi03g0024 1012 ProSitePatterns Protein kinases ATP-binding region signature. 706 728 IPR017441 GO:0005524
Glsi03g0024 1012 SMART LRR_sd22_2 125 148 - -
Glsi03g0024 1012 SMART LRR_sd22_2 149 172 - -
Glsi03g0024 1012 SMART LRR_sd22_2 469 495 - -
Glsi03g0024 1012 SMART LRR_sd22_2 173 199 - -
Glsi03g0024 1012 SMART LRR_sd22_2 566 592 - -
Glsi03g0024 1012 SMART LRR_sd22_2 221 247 - -
Glsi03g0024 1012 Gene3D Ribonuclease Inhibitor 337 635 IPR032675 -
Glsi03g0024 1012 Pfam Protein kinase domain 701 917 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi03g0024 1012 Gene3D Ribonuclease Inhibitor 184 268 IPR032675 -
Glsi03g0024 1012 Gene3D Ribonuclease Inhibitor 33 183 IPR032675 -
Glsi03g0024 1012 FunFam LRR receptor-like serine/threonine-protein kinase EFR 671 780 - -
Glsi03g0024 1012 Gene3D Ribonuclease Inhibitor 269 336 IPR032675 -
Glsi03g0024 1012 ProSiteProfiles Protein kinase domain profile. 700 1012 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi03g0024 1012 FunFam Receptor protein kinase CLAVATA1 33 191 - -
Glsi03g0024 1012 Gene3D Transferase(Phosphotransferase) domain 1 781 1008 - -
Glsi03g0024 1012 SMART LRR_typ_2 421 445 IPR003591 -
Glsi03g0024 1012 SMART LRR_typ_2 221 245 IPR003591 -
Glsi03g0024 1012 SMART LRR_typ_2 173 197 IPR003591 -
Glsi03g0024 1012 SMART LRR_typ_2 590 615 IPR003591 -
Glsi03g0024 1012 SMART LRR_typ_2 294 318 IPR003591 -
Glsi03g0024 1012 SMART LRR_typ_2 469 493 IPR003591 -
Glsi03g0024 1012 SMART LRR_typ_2 566 589 IPR003591 -
Glsi03g0024 1012 SMART LRR_typ_2 149 172 IPR003591 -
Glsi03g0024 1012 SMART LRR_typ_2 101 125 IPR003591 -
Glsi03g0024 1012 FunFam Inactive leucine-rich repeat receptor-like protein kinase 343 635 - -
Glsi03g0024 1012 PANTHER UNNAMED PRODUCT 343 916 - -
Glsi03g0024 1012 Gene3D Phosphorylase Kinase; domain 1 664 780 - -
Glsi03g0024 1012 CDD STKc_IRAK 706 983 - -
Glsi03g0024 1012 ProSitePatterns Serine/Threonine protein kinases active-site signature. 829 841 IPR008271 GO:0004672|GO:0006468
Glsi03g0024 1012 Pfam Leucine Rich Repeat 424 445 IPR001611 GO:0005515
Glsi03g0024 1012 SUPERFAMILY Protein kinase-like (PK-like) 681 991 IPR011009 -
Glsi03g0024 1012 ProSiteProfiles Leucine-rich repeat profile. 568 591 IPR001611 GO:0005515
Glsi03g0024 1012 FunFam Putative leucine-rich repeat receptor-like protein kinase family protein 231 339 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g0024 Glsi-ChrGlsi03 309195 312375 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi03g0024 36 1005 Receptor kinase-like Gene Family AT3G47570 42.180 0.0 725
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Glsi03g0024 Pkinase 1.3e-37 CL0016