Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g0023 ATGGACTTATCTAACAACAAGCTCAATGGAAGCATACCCAAAGAAATACTGAATCTCCCAACTCTAAGCAATGTTTTAAATGTGTCGAAGAACTTTTTAAGTGGATCTTTGCCTCAAGAAATAGGGAATTTGATTAGAGTTGCTTCCTTAGACCTCTCTAACAACCTTTTATCTGGTAATATCCCCCGCTCAATCAAAAATTGTCTGAGTCTGGAAAATCTATTTTTGGCCAGGAATATGCTCTCAGGTCCGATTCCAGAAACACTTGGAGAGGTTAGAGGTTTGGAAACCCTGGACCTTTCCTCCAACCAACTCTCTGGTTCCATTCCTGTTGAACTTCAAAATCTAAATGCCCTTCAGTTGTTGAACCTCTCTTATAATGATTTAGAAGGAGCCATTCCCAGTGGAGTTTTCAAAAGTTTCACTGCTGTCTATTTAGAAGGCAATGGGAAACTTTGCTCGCTCTCCGCATGTGTCACTCGAGGCCATGGAAGAAAGATGCTCCAAATTTATATCATCATCCCTATTGTGGTATCGTTTATACTGTGTTTCACAATTGGCTTGCTGCTGTACGTAAAGAGCAGAAAATTGAAGGTAACAGCATCATCTGACACGATAAAGCCATATCATCCAATGGTCTCTTATGATGAGCTCCGTCAGGCAACTGGGAACTTTAGCCAGGATAATTTAATAGGAATTGGGAGCTTTGGTTCAGTCTATAGAGGCCATCTAAGTCAAGCGAGTACTGTTGCAGTCAAAGTCCTCGACATTTTAAGAACTGGTTCTTTGAAGAGTTTCTTTGCAGAGTGTGAGGCTTTGAGGAATATAAGGCATCGAAATCTGGTTAAGCTGATCACATCATGCTCCAGCATAGACTTTACAAACAATGAATTTCTGGCTCTGGTTTACGAGTTCCTATGTAATGGCAGCTTGGAAGATTGGATTAAGGGAAAAAGAAAGCATTCAAATGGAAATGGGTTGAACTTGATGGAGAGACTGAATATTGCCATTGATGTTGCTTGTGCATTGGATTACCTGCACAATGATAGTGGAATTCCTATTGTGCATTGTGATTTGAAGCCCGCCAACATTCTTTTGGATGAAGATACGACTGCAAAGGTGGGAGACTTCGGATTGGCTAGGCTGCTGATTGAAAGACCAACTAATATTCAAGTCTCAATAAGCTCCACTCATGTCCTTAGAGGTTCAATTGGCTACATACCTCCAGAGTATGGATGGGGAGAAAAGCCATCAGTGGCCGGAGATGTATACAGTTTTGGAATTGTGTTGCTGGAGCTCTTTTCTGGGAAGAGCCCAACAGACGATAGCTTCACAGGAGGCTTAAGCCTTAGAAGATGGGTGCAATCGTCACTTACAGAAAAGATAGTGCAAGTCATAGACCCTCAGCTTCTATCACTCATGTTTAATAATGACCTCGCCGAAAGACCCCATCTACAACTTGATTGTCTGATTGCAATTCTCGGAGTTGGGTTATCCTGCACTGCAGATTCTCCAGATAGACGCCTTAGCATGAAAGACGCTGTTGGCAAGATACGAGCTGCTAGAGACTCTCTTTTCAAACACACTGCAAATAGGAGTTCTTCCCACCGTTAG 1614 0.4213 MDLSNNKLNGSIPKEILNLPTLSNVLNVSKNFLSGSLPQEIGNLIRVASLDLSNNLLSGNIPRSIKNCLSLENLFLARNMLSGPIPETLGEVRGLETLDLSSNQLSGSIPVELQNLNALQLLNLSYNDLEGAIPSGVFKSFTAVYLEGNGKLCSLSACVTRGHGRKMLQIYIIIPIVVSFILCFTIGLLLYVKSRKLKVTASSDTIKPYHPMVSYDELRQATGNFSQDNLIGIGSFGSVYRGHLSQASTVAVKVLDILRTGSLKSFFAECEALRNIRHRNLVKLITSCSSIDFTNNEFLALVYEFLCNGSLEDWIKGKRKHSNGNGLNLMERLNIAIDVACALDYLHNDSGIPIVHCDLKPANILLDEDTTAKVGDFGLARLLIERPTNIQVSISSTHVLRGSIGYIPPEYGWGEKPSVAGDVYSFGIVLLELFSGKSPTDDSFTGGLSLRRWVQSSLTEKIVQVIDPQLLSLMFNNDLAERPHLQLDCLIAILGVGLSCTADSPDRRLSMKDAVGKIRAARDSLFKHTANRSSSHR 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g0023 537 Pfam Leucine rich repeat 70 129 IPR001611 GO:0005515
Glsi03g0023 537 SUPERFAMILY Protein kinase-like (PK-like) 206 515 IPR011009 -
Glsi03g0023 537 PRINTS Leucine-rich repeat signature 95 108 - -
Glsi03g0023 537 PRINTS Leucine-rich repeat signature 116 129 - -
Glsi03g0023 537 ProSitePatterns Serine/Threonine protein kinases active-site signature. 354 366 IPR008271 GO:0004672|GO:0006468
Glsi03g0023 537 CDD STKc_IRAK 231 515 - -
Glsi03g0023 537 Pfam Protein kinase domain 226 444 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi03g0023 537 FunFam LRR receptor-like serine/threonine-protein kinase EFR 196 305 - -
Glsi03g0023 537 SMART serkin_6 225 493 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi03g0023 537 PANTHER OS04G0122200 PROTEIN 2 513 - -
Glsi03g0023 537 Pfam Leucine Rich Repeat 49 68 IPR001611 GO:0005515
Glsi03g0023 537 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 306 531 - -
Glsi03g0023 537 Gene3D Phosphorylase Kinase; domain 1 207 305 - -
Glsi03g0023 537 ProSiteProfiles Leucine-rich repeat profile. 94 117 IPR001611 GO:0005515
Glsi03g0023 537 ProSitePatterns Protein kinases ATP-binding region signature. 231 253 IPR017441 GO:0005524
Glsi03g0023 537 ProSiteProfiles Protein kinase domain profile. 225 526 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi03g0023 537 Gene3D Ribonuclease Inhibitor 1 163 IPR032675 -
Glsi03g0023 537 Gene3D Transferase(Phosphotransferase) domain 1 306 535 - -
Glsi03g0023 537 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 49 159 - -
Glsi03g0023 537 SUPERFAMILY L domain-like 2 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g0023 Glsi-ChrGlsi03 278465 280220 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi03g0023 3 534 Receptor kinase-like Gene Family AT3G47570 43.682 2.34e-141 431
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Glsi03g0023 Pkinase 2.3e-39 CL0016