Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g0021 ATGCAATCCTACGCCATAGTTACACAACTATCTCCTTCAATTCTTAAATCTGAGGGAGTTCCTGTATATCGTGCTGTCCAACATTCTGGGGAATTCATTATTACCTTTCCAAGGGCATACCATGTTGGCTTCAATTGTGGCTTCAACTGTGCAGAGGCAGTGAATGTGGCACCTGTTGATTGGTTACTGCATGGCCAGAATGCGGTTGAGCTTTACAGTAAACAGTGTCGTAAGACATCATTGTCACATGAAAAGTTGTTATTAGGATCGGCTCAGGAAGCTGTACGAGCTCTTGCAGAGCTGGAGCGTGGAATGGAATCTCAAGAAGCCATTGAAGCTCAGGATCCCAGTCATCAATGTGTGGAGTACTGGAATAACAACAATGTGGTCTCTGTATCTTCACTCAGTGCCAGTGATGACTATAAGTTCACTCATAGTTCAAGTAGCCCTTTAGGTAACATCAATTTAATGAAGCAGGATCAAGGGAATTCACTTATGAGAGGAAGCCATCAATCATTTGAGGAAATGAAATCAATAGTAGAAGAATTTTTAAGAAAGACAAGTCCTGATGAGTTATACACAATGCATAAGTTATTCAACTCTGACGCTCAGAGTGCTCAGTGGAGAGTGGCATTTGTAGCACTGATCGAGGAGATCCAAAAAGCTTGTAGATAA 675 0.4178 MQSYAIVTQLSPSILKSEGVPVYRAVQHSGEFIITFPRAYHVGFNCGFNCAEAVNVAPVDWLLHGQNAVELYSKQCRKTSLSHEKLLLGSAQEAVRALAELERGMESQEAIEAQDPSHQCVEYWNNNNVVSVSSLSASDDYKFTHSSSSPLGNINLMKQDQGNSLMRGSHQSFEEMKSIVEEFLRKTSPDELYTMHKLFNSDAQSAQWRVAFVALIEEIQKACR 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g0021 224 PANTHER LYSINE-SPECIFIC DEMETHYLASE 7 123 - -
Glsi03g0021 224 Coils Coil 91 111 - -
Glsi03g0021 224 Gene3D Cupin 4 128 - -
Glsi03g0021 224 SUPERFAMILY Clavaminate synthase-like 18 94 - -
Glsi03g0021 224 ProSiteProfiles JmjC domain profile. 1 73 IPR003347 -
Glsi03g0021 224 Pfam JmjC domain, hydroxylase 7 56 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g0021 Glsi-ChrGlsi03 261243 268556 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi03g0021 4 101 JUMONJI Transcription Factor Family AT1G30810 78.571 4.41e-49 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Glsi03g0021 JmjC 1.6e-18 CL0029