Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g0019 ATGCTTGTTTTCCTCGAGGCTTCTAATGTCAGTTTCTGGTTTGATTTTCTGCTAACCCATTGTGACTTTAACGTGGGAGGAGCCACTCTGGAGCAAGAAGGCGCAGCAGTTAGTAGAGATTGTCCTGACCACATTCTAGGGGTAATCGATTTGGCGGTCATCCATGGATACTGTAAGTGGAAGACTGGTCTACTTGCCGAGTCAATAGTGAGCCAACAGACCAGACTCAGTATGGGTTTCTTTTATCAAACATGGCTTCATTTCCCCTTGAATATTCTTCCTTTTCTTGTCCACTGCCTTTTGCTTGGTGTAGCATCTAGCTCTCTAAGCATTACCACAGATACAGAAGCTTTGATCTCATTTAAGTCTCAATTGAGAAATGATCCTCCTCACCCATTATCTTCTTGGAGCCACAGTTCATCGCCCTGCAACTGGACTGGCGTAATCTGCCACAGGCTTGGCCCCAGAGTGATTGCCTTAAACCTTTCAGGCTTGAGACTCTCGGGTCATTTAAGCCCTTATATAGGTAACTTGTCTTTCCTTCGGTCCCTCCAGTTACAGGATAACCAATTCACAGGAGTGATTCCTGAGCAAATTGGCAATCTTGTTCGGTTGAGAACTCTAAACATGAGTTCTAACAGCATCGAAGGAAAGCTTCCTTCAAACATCAGTCGCTTGACTGAACTCCAAACTCTTGACTTGTCGTCTAACAAGATTGTTAGCCAAATTCCCAAAAATATTGACCTCTTGACAAAGCTTCAAGTCTTGAAATTGGGAAGCAATAAACTCTTTGGTGCAGTTCCACCAAGTCTTGGAAATATTTCATCACTCACAAATATCAGTTTTGGCACCAACACTCTAAGTGGCTGGATTCCAGGTGAATTGGGTCGGCTTAAGAAATTGGTTCAGCTTGATCTCACTATCAACAATCTCACTGGGACTATTCCACCTTCTATATTTAATATATCTTCTCTAGTTAACTTGGCTTTAGCTTCCAACAACTTGTGGGGTGAGCTTCCTCAGGATGTTGGTTATAGACTTCCAAAACTCCTAGTGTTCAACTTCTGCTTTAATAGATTCACAGGCAGAATTCCTGGGTCTTTGCATAATCTCACCAACATTCGAGTCATCCGCATGGCTCACAACCTTTTGGAAGGAACAGTGCCACCGGGTCTCGAAAATCTCCCATTCCTTCGCATGTATAATATTGGGTATAATAGGATAGTCAACTCAGGAGACAGAGGTCTTGACTTCATTACTTCTTTGGCGAACAGCACCGTCCTCAACTTTCTTGCAATTGATGGTAATAGGCTGGAAGGTGTAATTCCTAAGACGGTTGGCAATCTGTCCAAGGTCCTCTCAAAATTATACATGGGACAGAATCGTTTCCAAGGAAATATACCCACCTCCGTTGCTCATCTTAGTGGCTTGAGTTTATTAAATTTGAGTTACAATGCCATCTCCGGAGAAATCCCACCTGAGTTAGGCCAATTAGAGGAACTGCAAGAGCTAATTCTGGCTGGAAATCATCTATCAGGAAGTATTCCAAACTCCCTTGGCAGTCTTCAAAAATTAAACCAAATTGATTTGTCAAGCAATGAGCTTGTAGGTAAAATACCCTTTAGTTTTGGCAATTTCCAAAACCTTCTCTCGATGGACTTATCGAACAACAAGCTCAATGGAAGCATACCCAAAGAAATACTGAATCTCCCAACTCTGAGCAATGTTTTAAATGTGTCCAAAAACTTCTTAAGTGGATCTTTGCCTCAAGAAGTAGGGAATTTGATTAGAGTTGCTTCCTTAGATCTCTCTAACAACCTTTTATCTGGTAACATCCCCCGCTCAATCAAAAATTGTCTGAGCCTAGAAAATTTATTTTTGGCCAGAAATATGCTTTTGGGTTCGATTCCAGAAACACTTGGAGAGGTCAGAGGCTTGGAAACTCTGGACCTTTCCTCCAACCAACTCTCTGGTTCCATTCCTGTTGAACTTCAAAATCTAAATGTCCTTCAGTTGTTGAACCTCTCTTATAATGATTTAGAAGGAGCCATTCCCAGTGGTGGAGTTTTCAAAAATCTCTCTGCTATCCATTTAGAAGGCAATAGGAAACTTTGTTTGCTCTCCACATGTGTGACTCGAGGCCATGGAAGAAAGATGCTCCAAATTTATATCATCATACCTATTGTGATATTGTTGATACTATGTTTCACAATAGGCTTGCTGATGTACGTAAAGAGCAGAAAACTAAAGATAACAACATCATCTGACATGATAAAGCCATATCATCCAATGGTCTCTTATGATGAGCTCCGTCAGGCAACTGGGAACTTCAGCCAGGATAATTTAATAGGAATTGGGAGCTTTGGTTCAGTCTATAGAGGCTATCTAAGTCAAGCGAGTACTGTTGCAGTAAAAGTCCTCGACACTTTAAGAACTGGTTCTTTGAAGAGTTTCTTTGCAGAGTGTGAGGCTTTGAGGAATGTAAGGCATCGAAATCTGGTTAAGCTGATCACATCATGCTCTAGCATAGACTTTACAAACAATGAATTTCTGGCTCTGGTTTACGAGTTCCTATGTAATGGCAGCTTGGAAGATTGGATTAAGGGAAAGAGAAAGCATTCAAATGGAAATGGGTTGAACTTGATGGAGAGACTGAATATTGCCATTGATGTTGCTTGCGCATTGGATTACCTGCACAATGATAGTGGAATTCCTATTGTCCATTGTGATTTGAAGCCCACCAACATTCTTTTGGATGAAGATATGACTGCAAAGGTGGGAGACTTCGGATTGGCTAGGCTGCTGATTGAAAGACCAACTAATATTCAAGTCTCAATAAGTTCCACTCACGTCCTTAGAGGTTCAATTGGCTACATACCTCCAGAGTATGGATGGGGAGAAAAGCCATCAGTGGCCGGAGATGTATACAGTTTTGGAATTGTGTTGCTGGAGCTCTTTTCTGGGAAGAGCCCAACGGACGATAGCTTCACAGGAGGTCTAAGCCTAAGAAGTTGGGTGCAATCTGCACTTACAGAAAAGATAGTGCAAGTGATAGACCCTCAGCTTCTATCACTCACTTTTAATAATGACCTCGCCAAAAGTCCCAATCTACAACTTGATTGTCTTATCGCAGTTCTCAGAGTTGGGTTAGCCTGCACTGCAGATTCTCCAGAGGGACGCCTTGGCATGAAAGATGCTGTTGGCAAGCTACAAGCTGCTAGAGACACTCTTTTCAAACCCACTGAAAATAGAGTCCATCCCAGCATTAGTTTCAACTAA 3279 0.4203 MLVFLEASNVSFWFDFLLTHCDFNVGGATLEQEGAAVSRDCPDHILGVIDLAVIHGYCKWKTGLLAESIVSQQTRLSMGFFYQTWLHFPLNILPFLVHCLLLGVASSSLSITTDTEALISFKSQLRNDPPHPLSSWSHSSSPCNWTGVICHRLGPRVIALNLSGLRLSGHLSPYIGNLSFLRSLQLQDNQFTGVIPEQIGNLVRLRTLNMSSNSIEGKLPSNISRLTELQTLDLSSNKIVSQIPKNIDLLTKLQVLKLGSNKLFGAVPPSLGNISSLTNISFGTNTLSGWIPGELGRLKKLVQLDLTINNLTGTIPPSIFNISSLVNLALASNNLWGELPQDVGYRLPKLLVFNFCFNRFTGRIPGSLHNLTNIRVIRMAHNLLEGTVPPGLENLPFLRMYNIGYNRIVNSGDRGLDFITSLANSTVLNFLAIDGNRLEGVIPKTVGNLSKVLSKLYMGQNRFQGNIPTSVAHLSGLSLLNLSYNAISGEIPPELGQLEELQELILAGNHLSGSIPNSLGSLQKLNQIDLSSNELVGKIPFSFGNFQNLLSMDLSNNKLNGSIPKEILNLPTLSNVLNVSKNFLSGSLPQEVGNLIRVASLDLSNNLLSGNIPRSIKNCLSLENLFLARNMLLGSIPETLGEVRGLETLDLSSNQLSGSIPVELQNLNVLQLLNLSYNDLEGAIPSGGVFKNLSAIHLEGNRKLCLLSTCVTRGHGRKMLQIYIIIPIVILLILCFTIGLLMYVKSRKLKITTSSDMIKPYHPMVSYDELRQATGNFSQDNLIGIGSFGSVYRGYLSQASTVAVKVLDTLRTGSLKSFFAECEALRNVRHRNLVKLITSCSSIDFTNNEFLALVYEFLCNGSLEDWIKGKRKHSNGNGLNLMERLNIAIDVACALDYLHNDSGIPIVHCDLKPTNILLDEDMTAKVGDFGLARLLIERPTNIQVSISSTHVLRGSIGYIPPEYGWGEKPSVAGDVYSFGIVLLELFSGKSPTDDSFTGGLSLRSWVQSALTEKIVQVIDPQLLSLTFNNDLAKSPNLQLDCLIAVLRVGLACTADSPEGRLGMKDAVGKLQAARDTLFKPTENRVHPSISFN 1092
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g0019 1092 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 858 1083 - -
Glsi03g0019 1092 SUPERFAMILY L domain-like 430 707 - -
Glsi03g0019 1092 Gene3D Ribonuclease Inhibitor 110 260 IPR032675 -
Glsi03g0019 1092 Gene3D Ribonuclease Inhibitor 261 344 IPR032675 -
Glsi03g0019 1092 Pfam Leucine rich repeat 621 680 IPR001611 GO:0005515
Glsi03g0019 1092 Pfam Leucine rich repeat 181 239 IPR001611 GO:0005515
Glsi03g0019 1092 Pfam Leucine rich repeat 453 511 IPR001611 GO:0005515
Glsi03g0019 1092 ProSitePatterns Serine/Threonine protein kinases active-site signature. 906 918 IPR008271 GO:0004672|GO:0006468
Glsi03g0019 1092 PANTHER LEUCINE RICH REPEAT KINASE 2 422 1076 - -
Glsi03g0019 1092 Pfam Protein kinase domain 778 995 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi03g0019 1092 Gene3D Ribonuclease Inhibitor 345 414 IPR032675 -
Glsi03g0019 1092 ProSiteProfiles Protein kinase domain profile. 777 1089 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi03g0019 1092 SMART serkin_6 777 1042 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi03g0019 1092 SUPERFAMILY L domain-like 111 410 - -
Glsi03g0019 1092 ProSitePatterns Protein kinases ATP-binding region signature. 783 805 IPR017441 GO:0005524
Glsi03g0019 1092 PRINTS Leucine-rich repeat signature 643 656 - -
Glsi03g0019 1092 PRINTS Leucine-rich repeat signature 549 562 - -
Glsi03g0019 1092 SMART LRR_sd22_2 546 572 - -
Glsi03g0019 1092 SMART LRR_sd22_2 298 324 - -
Glsi03g0019 1092 SMART LRR_sd22_2 226 249 - -
Glsi03g0019 1092 SMART LRR_sd22_2 643 669 - -
Glsi03g0019 1092 SMART LRR_sd22_2 202 225 - -
Glsi03g0019 1092 SMART LRR_sd22_2 250 276 - -
Glsi03g0019 1092 SUPERFAMILY Protein kinase-like (PK-like) 758 1069 IPR011009 -
Glsi03g0019 1092 Pfam Leucine rich repeat N-terminal domain 113 150 IPR013210 -
Glsi03g0019 1092 FunFam Receptor protein kinase CLAVATA1 110 268 - -
Glsi03g0019 1092 FunFam Inactive leucine-rich repeat receptor-like protein kinase 420 713 - -
Glsi03g0019 1092 CDD STKc_IRAK 783 1071 - -
Glsi03g0019 1092 Gene3D Ribonuclease Inhibitor 415 712 IPR032675 -
Glsi03g0019 1092 ProSiteProfiles Leucine-rich repeat profile. 645 668 IPR001611 GO:0005515
Glsi03g0019 1092 SMART LRR_typ_2 643 666 IPR003591 -
Glsi03g0019 1092 SMART LRR_typ_2 178 202 IPR003591 -
Glsi03g0019 1092 SMART LRR_typ_2 498 522 IPR003591 -
Glsi03g0019 1092 SMART LRR_typ_2 371 395 IPR003591 -
Glsi03g0019 1092 SMART LRR_typ_2 250 274 IPR003591 -
Glsi03g0019 1092 SMART LRR_typ_2 226 249 IPR003591 -
Glsi03g0019 1092 SMART LRR_typ_2 298 322 IPR003591 -
Glsi03g0019 1092 SMART LRR_typ_2 546 570 IPR003591 -
Glsi03g0019 1092 SMART LRR_typ_2 667 692 IPR003591 -
Glsi03g0019 1092 SMART LRR_typ_2 474 497 IPR003591 -
Glsi03g0019 1092 Gene3D Phosphorylase Kinase; domain 1 759 857 - -
Glsi03g0019 1092 ProSiteProfiles Leucine-rich repeat profile. 228 250 IPR001611 GO:0005515
Glsi03g0019 1092 FunFam Putative leucine-rich repeat receptor-like protein kinase family protein 308 415 - -
Glsi03g0019 1092 Gene3D Transferase(Phosphotransferase) domain 1 858 1085 - -
Glsi03g0019 1092 FunFam LRR receptor-like serine/threonine-protein kinase EFR 748 857 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g0019 Glsi-ChrGlsi03 253923 259550 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi03g0019 113 1082 Receptor kinase-like Gene Family AT3G47570 42.381 0.0 731
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Glsi03g0019 Pkinase 9.6e-39 CL0016